Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07355

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,386,622	-				+0.4
1,386,636	+				-1.2
1,386,636	+				-0.3
1,386,759	+		LU632_RS07350	0.12	+0.2
1,386,759	+		LU632_RS07350	0.12	-0.2
1,386,823	-		LU632_RS07350	0.23	-0.5
1,386,823	-		LU632_RS07350	0.23	-0.3
1,386,827	+		LU632_RS07350	0.23	-0.0
1,386,828	-		LU632_RS07350	0.23	-0.7
1,386,828	-		LU632_RS07350	0.23	-0.3
1,386,845	+		LU632_RS07350	0.26	-2.4
1,386,914	+		LU632_RS07350	0.37	-0.5
1,386,915	-		LU632_RS07350	0.37	-2.2
1,386,974	+		LU632_RS07350	0.47	+1.6
1,386,974	+		LU632_RS07350	0.47	+0.4
1,386,975	-		LU632_RS07350	0.47	-3.1
1,386,975	-		LU632_RS07350	0.47	-1.1
1,386,975	-		LU632_RS07350	0.47	+0.7
1,386,975	-		LU632_RS07350	0.47	-0.6
1,386,975	-		LU632_RS07350	0.47	+0.3
1,386,992	+		LU632_RS07350	0.50	+0.6
1,387,077	-		LU632_RS07350	0.63	-1.6
1,387,191	+		LU632_RS07350	0.81	-0.1
1,387,191	+		LU632_RS07350	0.81	-1.0
1,387,191	+		LU632_RS07350	0.81	+0.3
1,387,192	-		LU632_RS07350	0.81	+2.7
1,387,192	-		LU632_RS07350	0.81	+0.4
1,387,294	-				+0.3
1,387,294	-				-0.5
1,387,294	-				+0.3
1,387,294	-				+1.0
1,387,295	+				+1.2
1,387,296	-				+0.7
1,387,296	-				+0.1
1,387,356	+				+1.6
1,387,357	-				-2.4
1,387,357	-				+0.8
1,387,361	+				-0.2
1,387,362	-				+0.4
1,387,365	+				-1.1
1,387,366	-				+0.5
1,387,372	+				-1.0
1,387,372	+				+0.1
1,387,372	+				+0.4
1,387,373	-				+0.4
1,387,373	-				+2.7
1,388,939	+				+0.2
1,388,940	-				+2.9
1,388,961	+				+0.5
1,388,961	+				-0.7
1,388,961	+				-0.1
1,388,965	+				-1.7
1,388,965	+				+0.7
1,388,966	-				+1.4
1,388,990	+				+1.2
1,388,990	+				-0.6
1,388,990	+				-2.2
1,388,991	-				-0.4
1,389,006	+				+0.5
1,389,006	+				+2.0
1,389,125	-				+0.7
1,389,137	-				+1.0
1,389,137	-				+0.3
1,389,137	-				-0.6
1,389,137	-				-0.1
1,389,141	+				+0.3
1,389,144	-				-0.9
1,389,144	-				-0.7
1,389,145	+				-1.4
1,389,145	+				+0.5
1,389,146	-				+1.6
1,389,146	-				+2.0
1,389,188	+				+0.4
1,389,240	-				+1.2
1,389,240	-				-2.6
1,389,240	-				-1.3
1,389,352	+		LU632_RS07360	0.17	-1.4
1,389,352	+		LU632_RS07360	0.17	+0.5
1,389,353	-		LU632_RS07360	0.17	+0.1
1,389,353	-		LU632_RS07360	0.17	+1.8
1,389,361	-		LU632_RS07360	0.18	-2.9
1,389,375	+		LU632_RS07360	0.20	-2.3
1,389,375	+		LU632_RS07360	0.20	-1.0
1,389,375	+		LU632_RS07360	0.20	-0.0
1,389,376	-		LU632_RS07360	0.21	+1.2
1,389,475	-		LU632_RS07360	0.36	-0.7
1,389,572	+		LU632_RS07360	0.50	+0.9
1,389,572	+		LU632_RS07360	0.50	+0.9
1,389,573	-		LU632_RS07360	0.51	-0.2
1,389,608	+		LU632_RS07360	0.56	+0.1
1,389,656	-		LU632_RS07360	0.63	-0.7
1,389,687	+		LU632_RS07360	0.68	+0.3
1,389,687	+		LU632_RS07360	0.68	-1.9
1,389,687	+		LU632_RS07360	0.68	+0.0
1,389,687	+		LU632_RS07360	0.68	+0.6
1,389,687	+		LU632_RS07360	0.68	-1.6
1,389,688	-		LU632_RS07360	0.68	+0.6
1,389,688	-		LU632_RS07360	0.68	-2.7
1,389,689	+		LU632_RS07360	0.68	+1.2