Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07340

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,383,854	-		LU632_RS07330	0.20	+0.1
1,384,025	-		LU632_RS07330	0.46	+0.1
1,384,025	-		LU632_RS07330	0.46	+0.3
1,384,092	+		LU632_RS07330	0.56	+0.0
1,384,093	-		LU632_RS07330	0.56	+1.6
1,384,093	-		LU632_RS07330	0.56	-0.4
1,384,093	-		LU632_RS07330	0.56	-0.5
1,384,093	-		LU632_RS07330	0.56	+0.2
1,384,093	-		LU632_RS07330	0.56	-0.1
1,384,097	-		LU632_RS07330	0.57	+0.2
1,384,097	-		LU632_RS07330	0.57	-1.5
1,384,201	+		LU632_RS07330	0.73	+0.5
1,384,216	+		LU632_RS07330	0.75	+1.6
1,384,217	-		LU632_RS07330	0.75	+0.3
1,384,419	-				-1.1
1,384,433	-				+1.1
1,384,473	-				+0.7
1,384,473	-				+0.8
1,384,477	+				+0.8
1,386,270	-				+5.4
1,386,270	-				-0.9
1,386,292	+				+0.3
1,386,292	+				+0.8
1,386,292	+				-0.5
1,386,292	+				+0.8
1,386,292	-				+2.0
1,386,293	-				-0.2
1,386,293	-				-0.0
1,386,293	-				+2.1
1,386,293	-				+0.1
1,386,294	+				-0.1
1,386,294	+				-0.9
1,386,294	+				-1.1
1,386,294	+				-0.2
1,386,294	+				-2.7
1,386,295	-				-0.4
1,386,295	-				+0.1
1,386,295	-				-0.3
1,386,295	-				-2.5
1,386,338	-				-0.5
1,386,429	-				-2.0
1,386,454	-		LU632_RS07345	0.20	+1.7
1,386,485	+		LU632_RS07345	0.33	-1.7
1,386,485	+		LU632_RS07345	0.33	-1.6
1,386,501	+		LU632_RS07345	0.40	+0.6
1,386,622	-				+0.4
1,386,636	+				-1.2
1,386,636	+				-0.3
1,386,759	+		LU632_RS07350	0.12	+0.2
1,386,759	+		LU632_RS07350	0.12	-0.2
1,386,823	-		LU632_RS07350	0.23	-0.5
1,386,823	-		LU632_RS07350	0.23	-0.3
1,386,827	+		LU632_RS07350	0.23	-0.0
1,386,828	-		LU632_RS07350	0.23	-0.7
1,386,828	-		LU632_RS07350	0.23	-0.3
1,386,845	+		LU632_RS07350	0.26	-2.4
1,386,914	+		LU632_RS07350	0.37	-0.5
1,386,915	-		LU632_RS07350	0.37	-2.2
1,386,974	+		LU632_RS07350	0.47	+1.6
1,386,974	+		LU632_RS07350	0.47	+0.4
1,386,975	-		LU632_RS07350	0.47	-3.1
1,386,975	-		LU632_RS07350	0.47	-1.1
1,386,975	-		LU632_RS07350	0.47	+0.7
1,386,975	-		LU632_RS07350	0.47	-0.6
1,386,975	-		LU632_RS07350	0.47	+0.3
1,386,992	+		LU632_RS07350	0.50	+0.6