Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt relA and LU632_RS06355 overlap by 20 nucleotides LU632_RS06355 and mazG are separated by 2 nucleotides mazG and pyrG are separated by 211 nucleotides
LU632_RS06350: relA - GTP diphosphokinase, at 1,219,570 to 1,221,798
relA
LU632_RS06355: LU632_RS06355 - hypothetical protein, at 1,221,779 to 1,221,997
_RS06355
LU632_RS06360: mazG - nucleoside triphosphate pyrophosphohydrolase, at 1,222,000 to 1,222,782
mazG
LU632_RS06365: pyrG - CTP synthase (glutamine hydrolyzing), at 1,222,994 to 1,224,631
pyrG
Position (kb) 1221
1222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1220.865 kb on + strand, within relA at 1220.928 kb on + strand, within relA at 1220.933 kb on - strand, within relA at 1220.940 kb on - strand, within relA at 1220.964 kb on + strand, within relA at 1221.136 kb on - strand, within relA at 1221.175 kb on + strand, within relA at 1221.465 kb on + strand, within relA at 1221.651 kb on - strand at 1221.702 kb on + strand at 1221.718 kb on + strand at 1221.718 kb on + strand at 1221.819 kb on + strand, within LU632_RS06355 at 1221.907 kb on - strand, within LU632_RS06355 at 1221.956 kb on + strand, within LU632_RS06355 at 1221.957 kb on - strand, within LU632_RS06355 at 1221.961 kb on + strand, within LU632_RS06355 at 1222.084 kb on + strand, within mazG at 1222.084 kb on + strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.187 kb on + strand, within mazG at 1222.188 kb on - strand, within mazG at 1222.204 kb on + strand, within mazG at 1222.213 kb on - strand, within mazG at 1222.236 kb on + strand, within mazG at 1222.255 kb on - strand, within mazG at 1222.293 kb on + strand, within mazG at 1222.294 kb on - strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.410 kb on + strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.630 kb on - strand, within mazG at 1222.781 kb on - strand at 1222.781 kb on - strand at 1222.798 kb on - strand at 1222.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 1,220,865 + relA LU632_RS06350 0.58 -0.5 1,220,928 + relA LU632_RS06350 0.61 +0.4 1,220,933 - relA LU632_RS06350 0.61 +1.4 1,220,940 - relA LU632_RS06350 0.61 +1.6 1,220,964 + relA LU632_RS06350 0.63 -1.6 1,221,136 - relA LU632_RS06350 0.70 -0.8 1,221,175 + relA LU632_RS06350 0.72 -1.6 1,221,465 + relA LU632_RS06350 0.85 -0.7 1,221,651 - -0.0 1,221,702 + +1.8 1,221,718 + -2.3 1,221,718 + -0.8 1,221,819 + LU632_RS06355 0.18 -0.4 1,221,907 - LU632_RS06355 0.58 +0.3 1,221,956 + LU632_RS06355 0.81 -1.0 1,221,957 - LU632_RS06355 0.81 +0.2 1,221,961 + LU632_RS06355 0.83 -3.7 1,222,084 + mazG LU632_RS06360 0.11 -0.0 1,222,084 + mazG LU632_RS06360 0.11 +0.1 1,222,085 - mazG LU632_RS06360 0.11 -0.2 1,222,085 - mazG LU632_RS06360 0.11 -2.4 1,222,187 + mazG LU632_RS06360 0.24 -1.0 1,222,188 - mazG LU632_RS06360 0.24 -0.2 1,222,204 + mazG LU632_RS06360 0.26 -0.6 1,222,213 - mazG LU632_RS06360 0.27 -2.3 1,222,236 + mazG LU632_RS06360 0.30 -2.4 1,222,255 - mazG LU632_RS06360 0.33 -0.0 1,222,293 + mazG LU632_RS06360 0.37 +0.4 1,222,294 - mazG LU632_RS06360 0.38 -0.5 1,222,403 + mazG LU632_RS06360 0.51 -1.7 1,222,403 + mazG LU632_RS06360 0.51 -0.9 1,222,404 - mazG LU632_RS06360 0.52 -0.4 1,222,404 - mazG LU632_RS06360 0.52 +1.0 1,222,410 + mazG LU632_RS06360 0.52 -0.5 1,222,508 - mazG LU632_RS06360 0.65 -0.5 1,222,508 - mazG LU632_RS06360 0.65 +0.7 1,222,627 - mazG LU632_RS06360 0.80 +0.1 1,222,627 - mazG LU632_RS06360 0.80 -0.2 1,222,630 - mazG LU632_RS06360 0.80 +1.6 1,222,781 - -1.0 1,222,781 - -0.5 1,222,798 - +0.8 1,222,936 + -0.6
Or see this region's nucleotide sequence