Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt garL and garR are separated by 22 nucleotides garR and LU632_RS06335 are separated by 70 nucleotides LU632_RS06335 and barA are separated by 42 nucleotides
LU632_RS06325: garL - 2-dehydro-3-deoxyglucarate aldolase, at 1,212,443 to 1,213,213
garL
LU632_RS06330: garR - 2-hydroxy-3-oxopropionate reductase, at 1,213,236 to 1,214,120
garR
LU632_RS06335: LU632_RS06335 - glycerate kinase, at 1,214,191 to 1,215,336
_RS06335
LU632_RS06340: barA - two-component sensor histidine kinase BarA, at 1,215,379 to 1,218,106
barA
Position (kb) 1214
1215
1216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1213.191 kb on + strand at 1213.415 kb on + strand, within garR at 1213.415 kb on + strand, within garR at 1213.497 kb on - strand, within garR at 1213.506 kb on - strand, within garR at 1213.512 kb on - strand, within garR at 1213.674 kb on + strand, within garR at 1213.734 kb on - strand, within garR at 1213.776 kb on - strand, within garR at 1213.911 kb on - strand, within garR at 1213.911 kb on - strand, within garR at 1213.944 kb on - strand, within garR at 1213.946 kb on + strand, within garR at 1213.947 kb on - strand, within garR at 1214.188 kb on + strand at 1214.188 kb on + strand at 1214.189 kb on - strand at 1214.189 kb on - strand at 1214.189 kb on - strand at 1214.190 kb on + strand at 1214.191 kb on - strand at 1214.191 kb on - strand at 1214.191 kb on - strand at 1214.218 kb on + strand at 1214.219 kb on - strand at 1214.221 kb on - strand at 1214.420 kb on - strand, within LU632_RS06335 at 1214.450 kb on - strand, within LU632_RS06335 at 1214.547 kb on + strand, within LU632_RS06335 at 1214.648 kb on + strand, within LU632_RS06335 at 1214.697 kb on - strand, within LU632_RS06335 at 1214.697 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1214.913 kb on - strand, within LU632_RS06335 at 1215.122 kb on + strand, within LU632_RS06335 at 1215.127 kb on - strand, within LU632_RS06335 at 1215.134 kb on - strand, within LU632_RS06335 at 1215.139 kb on - strand, within LU632_RS06335 at 1215.153 kb on + strand, within LU632_RS06335 at 1215.153 kb on + strand, within LU632_RS06335 at 1215.154 kb on - strand, within LU632_RS06335 at 1215.294 kb on + strand at 1215.334 kb on + strand at 1215.335 kb on - strand at 1216.035 kb on + strand, within barA at 1216.036 kb on - strand, within barA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 1,213,191 + +0.3 1,213,415 + garR LU632_RS06330 0.20 +0.0 1,213,415 + garR LU632_RS06330 0.20 +2.0 1,213,497 - garR LU632_RS06330 0.29 -1.2 1,213,506 - garR LU632_RS06330 0.31 -1.2 1,213,512 - garR LU632_RS06330 0.31 -1.8 1,213,674 + garR LU632_RS06330 0.49 -0.6 1,213,734 - garR LU632_RS06330 0.56 -0.9 1,213,776 - garR LU632_RS06330 0.61 +0.5 1,213,911 - garR LU632_RS06330 0.76 +0.0 1,213,911 - garR LU632_RS06330 0.76 -1.6 1,213,944 - garR LU632_RS06330 0.80 -2.6 1,213,946 + garR LU632_RS06330 0.80 +0.3 1,213,947 - garR LU632_RS06330 0.80 -2.3 1,214,188 + -0.1 1,214,188 + -1.6 1,214,189 - +0.0 1,214,189 - -2.3 1,214,189 - -2.3 1,214,190 + +0.0 1,214,191 - -1.7 1,214,191 - -1.9 1,214,191 - -1.7 1,214,218 + +1.3 1,214,219 - -2.2 1,214,221 - -2.0 1,214,420 - LU632_RS06335 0.20 -1.6 1,214,450 - LU632_RS06335 0.23 -1.7 1,214,547 + LU632_RS06335 0.31 -1.5 1,214,648 + LU632_RS06335 0.40 -1.4 1,214,697 - LU632_RS06335 0.44 -3.0 1,214,697 - LU632_RS06335 0.44 -1.8 1,214,913 - LU632_RS06335 0.63 -2.6 1,214,913 - LU632_RS06335 0.63 -1.4 1,214,913 - LU632_RS06335 0.63 -0.7 1,214,913 - LU632_RS06335 0.63 -3.9 1,214,913 - LU632_RS06335 0.63 +1.7 1,215,122 + LU632_RS06335 0.81 -0.7 1,215,127 - LU632_RS06335 0.82 -1.8 1,215,134 - LU632_RS06335 0.82 -2.1 1,215,139 - LU632_RS06335 0.83 -1.7 1,215,153 + LU632_RS06335 0.84 -2.5 1,215,153 + LU632_RS06335 0.84 -0.4 1,215,154 - LU632_RS06335 0.84 -2.2 1,215,294 + +1.6 1,215,334 + -0.4 1,215,335 - -1.1 1,216,035 + barA LU632_RS06340 0.24 +0.0 1,216,036 - barA LU632_RS06340 0.24 -0.7
Or see this region's nucleotide sequence