Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05380

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05375 and LU632_RS05380 overlap by 74 nucleotidesLU632_RS05380 and LU632_RS05385 are separated by 858 nucleotides LU632_RS05375: LU632_RS05375 - hypothetical protein, at 1,037,157 to 1,037,447 _RS05375 LU632_RS05380: LU632_RS05380 - IS91 family transposase, at 1,037,374 to 1,038,369 _RS05380 LU632_RS05385: LU632_RS05385 - IS6 family transposase, at 1,039,228 to 1,039,931 _RS05385 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.505 kb on + strandat 1036.505 kb on + strandat 1036.615 kb on - strandat 1036.645 kb on + strandat 1036.646 kb on - strandat 1036.701 kb on - strandat 1036.720 kb on + strandat 1036.778 kb on + strandat 1038.440 kb on + strandat 1038.478 kb on + strandat 1038.479 kb on - strandat 1038.479 kb on - strandat 1038.479 kb on - strandat 1038.481 kb on + strandat 1038.481 kb on + strandat 1038.482 kb on - strandat 1038.482 kb on - strandat 1038.482 kb on - strandat 1038.505 kb on - strandat 1038.515 kb on + strandat 1038.525 kb on - strandat 1038.546 kb on - strandat 1038.587 kb on - strandat 1038.653 kb on - strandat 1038.667 kb on + strandat 1038.752 kb on + strandat 1038.753 kb on - strandat 1038.781 kb on - strandat 1038.863 kb on - strandat 1038.886 kb on + strandat 1038.886 kb on + strandat 1038.886 kb on + strandat 1038.890 kb on + strandat 1038.890 kb on + strandat 1038.942 kb on + strandat 1038.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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1,036,505 + -0.0
1,036,505 + -0.2
1,036,615 - -0.0
1,036,645 + +0.1
1,036,646 - +0.3
1,036,701 - -0.2
1,036,720 + -1.6
1,036,778 + -1.4
1,038,440 + -2.7
1,038,478 + +0.7
1,038,479 - -0.9
1,038,479 - -0.7
1,038,479 - -0.7
1,038,481 + +0.6
1,038,481 + -0.1
1,038,482 - -0.2
1,038,482 - +0.9
1,038,482 - -0.8
1,038,505 - +0.3
1,038,515 + +0.4
1,038,525 - -0.5
1,038,546 - -0.6
1,038,587 - +1.0
1,038,653 - +1.9
1,038,667 + -1.3
1,038,752 + -2.6
1,038,753 - -2.7
1,038,781 - +1.3
1,038,863 - +1.5
1,038,886 + -0.5
1,038,886 + -0.6
1,038,886 + +0.2
1,038,890 + +0.6
1,038,890 + -0.8
1,038,942 + -0.2
1,038,943 - +1.5

Or see this region's nucleotide sequence