Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04930 and traD are separated by 500 nucleotides traD and LU632_RS04940 overlap by 8 nucleotides LU632_RS04940 and LU632_RS04945 are separated by 100 nucleotides
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
LU632_RS04935: traD - type IV conjugative transfer system coupling protein TraD, at 962,343 to 963,739
traD
LU632_RS04940: LU632_RS04940 - TIGR03747 family integrating conjugative element membrane protein, at 963,732 to 964,490
_RS04940
LU632_RS04945: LU632_RS04945 - hypothetical protein, at 964,591 to 964,812
_RS04945
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 961.644 kb on + strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.649 kb on - strand, within LU632_RS04930 at 961.678 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.740 kb on + strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.827 kb on + strand at 961.828 kb on - strand at 961.905 kb on + strand at 961.906 kb on - strand at 961.906 kb on - strand at 961.933 kb on + strand at 962.058 kb on - strand at 962.058 kb on - strand at 962.123 kb on + strand at 962.147 kb on + strand at 962.147 kb on + strand at 962.239 kb on + strand at 962.240 kb on - strand at 962.382 kb on + strand at 962.383 kb on - strand at 962.383 kb on - strand at 962.431 kb on + strand at 962.540 kb on - strand, within traD at 962.581 kb on - strand, within traD at 962.598 kb on + strand, within traD at 962.598 kb on + strand, within traD at 962.599 kb on - strand, within traD at 962.622 kb on + strand, within traD at 962.623 kb on - strand, within traD at 962.623 kb on - strand, within traD at 962.750 kb on - strand, within traD at 962.753 kb on + strand, within traD at 962.753 kb on + strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.754 kb on - strand, within traD at 962.802 kb on + strand, within traD at 962.803 kb on - strand, within traD at 962.803 kb on - strand, within traD at 962.854 kb on - strand, within traD at 962.938 kb on - strand, within traD at 962.983 kb on + strand, within traD at 962.984 kb on - strand, within traD at 963.006 kb on + strand, within traD at 963.006 kb on + strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.007 kb on - strand, within traD at 963.099 kb on + strand, within traD at 963.100 kb on - strand, within traD at 963.337 kb on + strand, within traD at 963.338 kb on - strand, within traD at 963.342 kb on + strand, within traD at 963.343 kb on - strand, within traD at 963.404 kb on + strand, within traD at 963.749 kb on + strand at 963.750 kb on - strand at 963.752 kb on + strand at 963.752 kb on + strand at 963.753 kb on - strand at 963.753 kb on - strand at 963.753 kb on - strand at 963.795 kb on + strand at 963.798 kb on - strand at 963.798 kb on - strand at 963.798 kb on - strand at 963.884 kb on - strand, within LU632_RS04940 at 964.008 kb on - strand, within LU632_RS04940 at 964.022 kb on - strand, within LU632_RS04940 at 964.026 kb on + strand, within LU632_RS04940 at 964.055 kb on + strand, within LU632_RS04940 at 964.066 kb on + strand, within LU632_RS04940 at 964.153 kb on + strand, within LU632_RS04940 at 964.153 kb on + strand, within LU632_RS04940 at 964.153 kb on + strand, within LU632_RS04940 at 964.154 kb on - strand, within LU632_RS04940 at 964.154 kb on - strand, within LU632_RS04940 at 964.162 kb on - strand, within LU632_RS04940 at 964.162 kb on - strand, within LU632_RS04940 at 964.183 kb on + strand, within LU632_RS04940 at 964.184 kb on - strand, within LU632_RS04940 at 964.337 kb on + strand, within LU632_RS04940 at 964.364 kb on - strand, within LU632_RS04940 at 964.380 kb on + strand, within LU632_RS04940 at 964.451 kb on + strand at 964.489 kb on - strand at 964.489 kb on - strand at 964.514 kb on - strand at 964.563 kb on + strand at 964.671 kb on - strand, within LU632_RS04945
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 961,644 + LU632_RS04930 0.72 -2.4 961,645 - LU632_RS04930 0.72 -2.3 961,645 - LU632_RS04930 0.72 +0.1 961,648 + LU632_RS04930 0.72 +0.4 961,648 + LU632_RS04930 0.72 -1.2 961,649 - LU632_RS04930 0.72 -2.3 961,678 - LU632_RS04930 0.77 -1.7 961,683 - LU632_RS04930 0.77 -1.2 961,683 - LU632_RS04930 0.77 -1.3 961,740 + LU632_RS04930 0.85 -2.7 961,741 - LU632_RS04930 0.86 +1.9 961,741 - LU632_RS04930 0.86 +2.0 961,827 + +1.9 961,828 - -2.6 961,905 + -1.9 961,906 - +2.1 961,906 - +0.6 961,933 + -1.5 962,058 - +1.2 962,058 - -0.5 962,123 + -0.2 962,147 + +0.5 962,147 + -1.1 962,239 + -0.3 962,240 - +1.5 962,382 + +0.6 962,383 - -0.9 962,383 - -2.9 962,431 + -0.3 962,540 - traD LU632_RS04935 0.14 +1.2 962,581 - traD LU632_RS04935 0.17 +0.2 962,598 + traD LU632_RS04935 0.18 +0.1 962,598 + traD LU632_RS04935 0.18 -0.5 962,599 - traD LU632_RS04935 0.18 -1.5 962,622 + traD LU632_RS04935 0.20 -0.0 962,623 - traD LU632_RS04935 0.20 -0.4 962,623 - traD LU632_RS04935 0.20 +0.4 962,750 - traD LU632_RS04935 0.29 +1.8 962,753 + traD LU632_RS04935 0.29 +0.7 962,753 + traD LU632_RS04935 0.29 +0.6 962,754 - traD LU632_RS04935 0.29 -1.8 962,754 - traD LU632_RS04935 0.29 -0.7 962,754 - traD LU632_RS04935 0.29 -0.8 962,754 - traD LU632_RS04935 0.29 -1.4 962,754 - traD LU632_RS04935 0.29 -1.5 962,802 + traD LU632_RS04935 0.33 +0.2 962,803 - traD LU632_RS04935 0.33 +0.7 962,803 - traD LU632_RS04935 0.33 +1.6 962,854 - traD LU632_RS04935 0.37 +1.4 962,938 - traD LU632_RS04935 0.43 +1.1 962,983 + traD LU632_RS04935 0.46 +0.2 962,984 - traD LU632_RS04935 0.46 -1.3 963,006 + traD LU632_RS04935 0.47 -0.3 963,006 + traD LU632_RS04935 0.47 +0.5 963,007 - traD LU632_RS04935 0.48 -0.4 963,007 - traD LU632_RS04935 0.48 -0.0 963,007 - traD LU632_RS04935 0.48 -1.1 963,007 - traD LU632_RS04935 0.48 +0.9 963,007 - traD LU632_RS04935 0.48 +1.5 963,007 - traD LU632_RS04935 0.48 -3.0 963,007 - traD LU632_RS04935 0.48 +1.0 963,007 - traD LU632_RS04935 0.48 -0.2 963,007 - traD LU632_RS04935 0.48 +0.5 963,007 - traD LU632_RS04935 0.48 +1.6 963,099 + traD LU632_RS04935 0.54 +0.6 963,100 - traD LU632_RS04935 0.54 +0.9 963,337 + traD LU632_RS04935 0.71 -2.7 963,338 - traD LU632_RS04935 0.71 -2.1 963,342 + traD LU632_RS04935 0.72 +2.4 963,343 - traD LU632_RS04935 0.72 +0.1 963,404 + traD LU632_RS04935 0.76 -0.4 963,749 + -0.6 963,750 - +0.5 963,752 + +0.5 963,752 + -0.7 963,753 - +0.6 963,753 - -0.1 963,753 - +0.6 963,795 + +0.1 963,798 - -1.0 963,798 - +0.3 963,798 - +0.1 963,884 - LU632_RS04940 0.20 -0.4 964,008 - LU632_RS04940 0.36 -1.6 964,022 - LU632_RS04940 0.38 -1.3 964,026 + LU632_RS04940 0.39 +1.2 964,055 + LU632_RS04940 0.43 +1.6 964,066 + LU632_RS04940 0.44 -2.7 964,153 + LU632_RS04940 0.55 +1.0 964,153 + LU632_RS04940 0.55 -0.4 964,153 + LU632_RS04940 0.55 -0.9 964,154 - LU632_RS04940 0.56 +0.8 964,154 - LU632_RS04940 0.56 +0.4 964,162 - LU632_RS04940 0.57 +0.6 964,162 - LU632_RS04940 0.57 +0.1 964,183 + LU632_RS04940 0.59 +2.9 964,184 - LU632_RS04940 0.60 -2.4 964,337 + LU632_RS04940 0.80 +0.4 964,364 - LU632_RS04940 0.83 -0.8 964,380 + LU632_RS04940 0.85 +1.2 964,451 + -0.9 964,489 - -0.3 964,489 - +1.3 964,514 - +0.1 964,563 + -1.4 964,671 - LU632_RS04945 0.36 +1.8
Or see this region's nucleotide sequence