Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04915 and LU632_RS04920 are separated by 194 nucleotides LU632_RS04920 and LU632_RS04925 overlap by 4 nucleotides LU632_RS04925 and LU632_RS04930 are separated by 6 nucleotides
LU632_RS04915: LU632_RS04915 - IS4 family transposase, at 958,299 to 959,621
_RS04915
LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412
_RS04920
LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131
_RS04925
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
Position (kb) 959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 959.793 kb on - strand at 959.793 kb on - strand at 959.836 kb on + strand at 959.837 kb on - strand at 959.979 kb on - strand, within LU632_RS04920 at 960.005 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.076 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.083 kb on - strand, within LU632_RS04920 at 960.128 kb on - strand, within LU632_RS04920 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.524 kb on + strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.594 kb on + strand, within LU632_RS04925 at 961.020 kb on - strand, within LU632_RS04925 at 961.119 kb on + strand at 961.137 kb on + strand at 961.203 kb on + strand at 961.204 kb on - strand at 961.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 959,793 - +2.0 959,793 - +1.7 959,836 + -3.4 959,837 - +0.3 959,979 - LU632_RS04920 0.27 -2.7 960,005 + LU632_RS04920 0.32 -1.2 960,070 + LU632_RS04920 0.43 +0.5 960,070 + LU632_RS04920 0.43 +1.6 960,070 + LU632_RS04920 0.43 +0.1 960,076 + LU632_RS04920 0.44 -1.1 960,078 + LU632_RS04920 0.44 +0.2 960,078 + LU632_RS04920 0.44 +1.6 960,078 + LU632_RS04920 0.44 -0.7 960,078 + LU632_RS04920 0.44 -1.4 960,078 + LU632_RS04920 0.44 -0.7 960,078 + LU632_RS04920 0.44 +0.5 960,078 + LU632_RS04920 0.44 +0.4 960,078 + LU632_RS04920 0.44 +2.2 960,078 + LU632_RS04920 0.44 +0.6 960,078 + LU632_RS04920 0.44 -0.4 960,078 + LU632_RS04920 0.44 -0.1 960,078 + LU632_RS04920 0.44 -3.6 960,079 - LU632_RS04920 0.44 -1.4 960,079 - LU632_RS04920 0.44 +0.2 960,079 - LU632_RS04920 0.44 +1.6 960,079 - LU632_RS04920 0.44 -1.2 960,079 - LU632_RS04920 0.44 -0.4 960,079 - LU632_RS04920 0.44 -1.7 960,079 - LU632_RS04920 0.44 +1.0 960,079 - LU632_RS04920 0.44 +0.1 960,083 - LU632_RS04920 0.45 -0.1 960,128 - LU632_RS04920 0.52 +0.1 960,492 + LU632_RS04925 0.11 -0.1 960,492 + LU632_RS04925 0.11 -0.2 960,492 + LU632_RS04925 0.11 +1.7 960,524 + LU632_RS04925 0.16 +0.6 960,525 - LU632_RS04925 0.16 +2.4 960,525 - LU632_RS04925 0.16 +0.4 960,529 + LU632_RS04925 0.17 -0.7 960,529 + LU632_RS04925 0.17 -1.6 960,530 - LU632_RS04925 0.17 -0.6 960,530 - LU632_RS04925 0.17 -2.7 960,591 + LU632_RS04925 0.25 -0.9 960,591 + LU632_RS04925 0.25 -0.2 960,591 + LU632_RS04925 0.25 +1.0 960,594 + LU632_RS04925 0.26 +0.3 961,020 - LU632_RS04925 0.85 -1.5 961,119 + -0.6 961,137 + -0.9 961,203 + +0.0 961,204 - -3.1 961,204 - +0.2
Or see this region's nucleotide sequence