Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04815

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS04805 and LU632_RS04810 are separated by 497 nucleotidesLU632_RS04810 and LU632_RS04815 are separated by 31 nucleotidesLU632_RS04815 and LU632_RS04820 are separated by 144 nucleotides LU632_RS04805: LU632_RS04805 - hypothetical protein, at 941,939 to 942,214 _RS04805 LU632_RS04810: LU632_RS04810 - hypothetical protein, at 942,712 to 942,975 _RS04810 LU632_RS04815: LU632_RS04815 - IS1 family transposase, at 943,007 to 943,111 _RS04815 LU632_RS04820: LU632_RS04820 - IS91 family transposase, at 943,256 to 944,479 _RS04820 Position (kb) 943 944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 942.027 kb on + strand, within LU632_RS04805at 942.073 kb on - strand, within LU632_RS04805at 942.130 kb on + strand, within LU632_RS04805at 942.145 kb on - strand, within LU632_RS04805at 942.194 kb on - strandat 942.912 kb on + strand, within LU632_RS04810at 943.094 kb on + strand, within LU632_RS04815at 943.094 kb on + strand, within LU632_RS04815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
remove
942,027 + LU632_RS04805 0.32 +0.0
942,073 - LU632_RS04805 0.49 +4.0
942,130 + LU632_RS04805 0.69 +1.3
942,145 - LU632_RS04805 0.75 -1.1
942,194 - +0.7
942,912 + LU632_RS04810 0.76 -4.0
943,094 + LU632_RS04815 0.83 +0.3
943,094 + LU632_RS04815 0.83 -0.9

Or see this region's nucleotide sequence