Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04685

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04680 and LU632_RS04685 are separated by 34 nucleotidesLU632_RS04685 and LU632_RS04690 are separated by 6 nucleotidesLU632_RS04690 and LU632_RS04695 are separated by 161 nucleotides LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689 _RS04680 LU632_RS04685: LU632_RS04685 - universal stress protein, at 917,724 to 918,089 _RS04685 LU632_RS04690: LU632_RS04690 - IclR family transcriptional regulator, at 918,096 to 918,878 _RS04690 LU632_RS04695: LU632_RS04695 - MFS transporter, at 919,040 to 920,632 _RS04695 Position (kb) 917 918 919Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 917.744 kb on + strandat 917.811 kb on + strand, within LU632_RS04685at 917.811 kb on + strand, within LU632_RS04685at 917.938 kb on - strand, within LU632_RS04685at 917.938 kb on - strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.985 kb on + strand, within LU632_RS04685at 917.986 kb on - strand, within LU632_RS04685at 917.986 kb on - strand, within LU632_RS04685at 917.992 kb on - strand, within LU632_RS04685at 918.120 kb on + strandat 918.207 kb on + strand, within LU632_RS04690at 918.231 kb on + strand, within LU632_RS04690at 918.353 kb on + strand, within LU632_RS04690at 918.354 kb on - strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.508 kb on + strand, within LU632_RS04690at 918.509 kb on - strand, within LU632_RS04690at 918.509 kb on - strand, within LU632_RS04690at 918.640 kb on - strand, within LU632_RS04690at 918.889 kb on + strandat 918.890 kb on - strandat 918.890 kb on - strandat 918.911 kb on + strandat 918.931 kb on + strandat 918.932 kb on - strandat 918.932 kb on - strandat 918.975 kb on - strandat 918.975 kb on - strandat 918.977 kb on + strandat 919.039 kb on + strandat 919.054 kb on + strandat 919.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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917,744 + +2.4
917,811 + LU632_RS04685 0.24 -0.9
917,811 + LU632_RS04685 0.24 -1.0
917,938 - LU632_RS04685 0.58 -0.4
917,938 - LU632_RS04685 0.58 -1.1
917,985 + LU632_RS04685 0.71 -1.4
917,985 + LU632_RS04685 0.71 -0.1
917,985 + LU632_RS04685 0.71 -0.2
917,985 + LU632_RS04685 0.71 +1.0
917,986 - LU632_RS04685 0.72 +1.0
917,986 - LU632_RS04685 0.72 -0.9
917,992 - LU632_RS04685 0.73 -0.7
918,120 + -1.7
918,207 + LU632_RS04690 0.14 +1.5
918,231 + LU632_RS04690 0.17 +6.5
918,353 + LU632_RS04690 0.33 -1.4
918,354 - LU632_RS04690 0.33 +0.1
918,508 + LU632_RS04690 0.53 +0.5
918,508 + LU632_RS04690 0.53 +1.3
918,508 + LU632_RS04690 0.53 -2.3
918,508 + LU632_RS04690 0.53 -0.4
918,509 - LU632_RS04690 0.53 +0.2
918,509 - LU632_RS04690 0.53 -0.7
918,640 - LU632_RS04690 0.69 +0.5
918,889 + +0.5
918,890 - +0.5
918,890 - +0.1
918,911 + -0.2
918,931 + +0.9
918,932 - -0.4
918,932 - -0.7
918,975 - -2.2
918,975 - -0.6
918,977 + +1.3
919,039 + +0.2
919,054 + +2.1
919,073 - -1.0

Or see this region's nucleotide sequence