Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04665 and LU632_RS04670 are separated by 566 nucleotides LU632_RS04670 and LU632_RS04675 overlap by 4 nucleotides LU632_RS04675 and LU632_RS04680 are separated by 248 nucleotides
LU632_RS04665: LU632_RS04665 - IS3 family transposase, at 913,177 to 914,351
_RS04665
LU632_RS04670: LU632_RS04670 - conjugative transfer ATPase, at 914,918 to 916,131
_RS04670
LU632_RS04675: LU632_RS04675 - hypothetical protein, at 916,128 to 916,532
_RS04675
LU632_RS04680: LU632_RS04680 - IS481 family transposase, at 916,781 to 917,689
_RS04680
Position (kb) 914
915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 914.410 kb on + strand at 914.431 kb on + strand at 914.432 kb on - strand at 914.481 kb on - strand at 914.529 kb on + strand at 914.614 kb on + strand at 914.615 kb on - strand at 914.616 kb on + strand at 914.616 kb on + strand at 914.616 kb on + strand at 914.617 kb on - strand at 914.671 kb on - strand at 914.671 kb on - strand at 914.671 kb on - strand at 914.711 kb on - strand at 914.888 kb on + strand at 916.721 kb on + strand at 916.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 914,410 + -1.8 914,431 + +1.0 914,432 - -0.4 914,481 - +0.4 914,529 + +0.4 914,614 + -1.5 914,615 - +0.4 914,616 + +1.2 914,616 + -1.5 914,616 + +0.3 914,617 - -0.7 914,671 - -3.1 914,671 - +0.0 914,671 - +0.0 914,711 - -1.5 914,888 + -0.3 916,721 + -1.9 916,722 - -0.9
Or see this region's nucleotide sequence