Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04155 and LU632_RS04160 are separated by 217 nucleotides LU632_RS04160 and LU632_RS04165 are separated by 345 nucleotides
LU632_RS04155: LU632_RS04155 - polysaccharide lyase family protein, at 823,836 to 825,554
_RS04155
LU632_RS04160: LU632_RS04160 - KdgM family transporter, at 825,772 to 826,515
_RS04160
LU632_RS04165: LU632_RS04165 - 2-isopropylmalate synthase, at 826,861 to 827,376
_RS04165
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1
2 at 824.872 kb on + strand, within LU632_RS04155 at 824.940 kb on + strand, within LU632_RS04155 at 824.960 kb on + strand, within LU632_RS04155 at 825.137 kb on + strand, within LU632_RS04155 at 825.137 kb on + strand, within LU632_RS04155 at 825.141 kb on + strand, within LU632_RS04155 at 825.217 kb on - strand, within LU632_RS04155 at 825.361 kb on + strand, within LU632_RS04155 at 825.453 kb on - strand at 825.453 kb on - strand at 825.492 kb on - strand at 825.528 kb on + strand at 825.529 kb on - strand at 825.529 kb on - strand at 825.536 kb on + strand at 825.537 kb on - strand at 825.540 kb on - strand at 825.663 kb on + strand at 825.722 kb on - strand at 825.969 kb on + strand, within LU632_RS04160 at 826.011 kb on + strand, within LU632_RS04160 at 826.012 kb on - strand, within LU632_RS04160 at 826.023 kb on - strand, within LU632_RS04160 at 826.105 kb on - strand, within LU632_RS04160 at 826.147 kb on + strand, within LU632_RS04160 at 826.158 kb on + strand, within LU632_RS04160 at 826.365 kb on + strand, within LU632_RS04160 at 826.366 kb on - strand, within LU632_RS04160 at 826.370 kb on - strand, within LU632_RS04160 at 826.383 kb on - strand, within LU632_RS04160 at 826.427 kb on - strand, within LU632_RS04160 at 826.443 kb on + strand at 826.446 kb on + strand at 826.618 kb on + strand at 826.719 kb on - strand at 826.754 kb on + strand at 826.754 kb on + strand at 826.801 kb on + strand at 826.852 kb on + strand at 826.888 kb on - strand at 826.888 kb on - strand at 826.999 kb on - strand, within LU632_RS04165 at 827.054 kb on + strand, within LU632_RS04165 at 827.058 kb on + strand, within LU632_RS04165 at 827.097 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.236 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.256 kb on + strand, within LU632_RS04165 at 827.257 kb on - strand, within LU632_RS04165 at 827.335 kb on - strand at 827.336 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.338 kb on + strand at 827.339 kb on - strand at 827.404 kb on + strand at 827.426 kb on + strand at 827.426 kb on + strand at 827.431 kb on + strand at 827.432 kb on - strand at 827.466 kb on + strand at 827.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 824,872 + LU632_RS04155 0.60 -0.0 824,940 + LU632_RS04155 0.64 +0.9 824,960 + LU632_RS04155 0.65 +0.1 825,137 + LU632_RS04155 0.76 -1.8 825,137 + LU632_RS04155 0.76 -0.5 825,141 + LU632_RS04155 0.76 -1.8 825,217 - LU632_RS04155 0.80 +0.9 825,361 + LU632_RS04155 0.89 -0.2 825,453 - -0.6 825,453 - +0.7 825,492 - +1.0 825,528 + +1.1 825,529 - +1.6 825,529 - -1.8 825,536 + -1.9 825,537 - -0.8 825,540 - +1.1 825,663 + +0.7 825,722 - -0.6 825,969 + LU632_RS04160 0.26 -0.2 826,011 + LU632_RS04160 0.32 -1.9 826,012 - LU632_RS04160 0.32 +0.2 826,023 - LU632_RS04160 0.34 -1.2 826,105 - LU632_RS04160 0.45 -2.0 826,147 + LU632_RS04160 0.50 -0.3 826,158 + LU632_RS04160 0.52 -1.4 826,365 + LU632_RS04160 0.80 -0.2 826,366 - LU632_RS04160 0.80 -1.8 826,370 - LU632_RS04160 0.80 -0.9 826,383 - LU632_RS04160 0.82 -0.6 826,427 - LU632_RS04160 0.88 +1.6 826,443 + -0.0 826,446 + -0.2 826,618 + -1.3 826,719 - -0.8 826,754 + -0.4 826,754 + -0.7 826,801 + +0.5 826,852 + +0.0 826,888 - +1.7 826,888 - +0.4 826,999 - LU632_RS04165 0.27 -0.7 827,054 + LU632_RS04165 0.37 +1.8 827,058 + LU632_RS04165 0.38 +1.4 827,097 + LU632_RS04165 0.46 -1.4 827,236 + LU632_RS04165 0.73 +0.5 827,236 + LU632_RS04165 0.73 +0.2 827,256 + LU632_RS04165 0.77 -0.7 827,256 + LU632_RS04165 0.77 +2.3 827,257 - LU632_RS04165 0.77 -2.1 827,335 - -1.0 827,336 + +0.5 827,338 + +1.0 827,338 + +1.7 827,338 + +1.6 827,338 + -1.4 827,339 - +0.8 827,404 + +0.0 827,426 + -1.1 827,426 + -0.3 827,431 + +0.0 827,432 - -1.4 827,466 + +0.6 827,503 - +1.0
Or see this region's nucleotide sequence