Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03910 and LU632_RS03915 are separated by 161 nucleotides LU632_RS03915 and LU632_RS03920 overlap by 4 nucleotides LU632_RS03920 and LU632_RS03925 are separated by 136 nucleotides
LU632_RS03910: LU632_RS03910 - DUF6531 domain-containing protein, at 783,802 to 787,896
_RS03910
LU632_RS03915: LU632_RS03915 - HNH/ENDO VII family nuclease, at 788,058 to 788,339
_RS03915
LU632_RS03920: LU632_RS03920 - SMI1/KNR4 family protein, at 788,336 to 788,767
_RS03920
LU632_RS03925: LU632_RS03925 - IS481 family transposase, at 788,904 to 789,944
_RS03925
Position (kb) 788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 787.348 kb on + strand, within LU632_RS03910 at 787.348 kb on + strand, within LU632_RS03910 at 787.414 kb on + strand, within LU632_RS03910 at 787.447 kb on - strand, within LU632_RS03910 at 787.447 kb on - strand, within LU632_RS03910 at 787.556 kb on - strand at 787.630 kb on + strand at 787.819 kb on + strand at 787.819 kb on + strand at 787.821 kb on + strand at 787.821 kb on + strand at 787.822 kb on - strand at 787.837 kb on + strand at 787.838 kb on - strand at 787.859 kb on - strand at 787.903 kb on - strand at 787.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 787,348 + LU632_RS03910 0.87 -0.2 787,348 + LU632_RS03910 0.87 +0.1 787,414 + LU632_RS03910 0.88 +0.3 787,447 - LU632_RS03910 0.89 -0.7 787,447 - LU632_RS03910 0.89 -3.0 787,556 - -2.1 787,630 + +0.4 787,819 + +0.8 787,819 + +0.5 787,821 + -2.6 787,821 + -0.2 787,822 - -1.2 787,837 + -0.5 787,838 - +0.9 787,859 - -0.5 787,903 - +0.6 787,903 - -2.9
Or see this region's nucleotide sequence