Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03450 and LU632_RS03455 are separated by 38 nucleotides LU632_RS03455 and LU632_RS03460 are separated by 46 nucleotides LU632_RS03460 and LU632_RS03465 are separated by 30 nucleotides LU632_RS03465 and LU632_RS03470 are separated by 503 nucleotides
LU632_RS03450: LU632_RS03450 - hypothetical protein, at 704,426 to 705,979
_RS03450
LU632_RS03455: LU632_RS03455 - hypothetical protein, at 706,018 to 706,497
_RS03455
LU632_RS03460: LU632_RS03460 - IS91 family transposase, at 706,544 to 707,767
_RS03460
LU632_RS03465: LU632_RS03465 - hypothetical protein, at 707,798 to 707,953
_RS03465
LU632_RS03470: LU632_RS03470 - hypothetical protein, at 708,457 to 708,939
_RS03470
Position (kb) 706
707
708 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 705.684 kb on + strand, within LU632_RS03450 at 705.684 kb on + strand, within LU632_RS03450 at 705.685 kb on - strand, within LU632_RS03450 at 705.721 kb on - strand, within LU632_RS03450 at 705.730 kb on - strand, within LU632_RS03450 at 705.732 kb on + strand, within LU632_RS03450 at 705.748 kb on + strand, within LU632_RS03450 at 705.748 kb on + strand, within LU632_RS03450 at 705.874 kb on + strand at 705.874 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.946 kb on + strand at 705.947 kb on - strand at 705.947 kb on - strand at 705.947 kb on - strand at 705.985 kb on + strand at 705.986 kb on - strand at 705.989 kb on - strand at 706.012 kb on - strand at 706.076 kb on - strand, within LU632_RS03455 at 706.076 kb on - strand, within LU632_RS03455 at 706.100 kb on + strand, within LU632_RS03455 at 706.101 kb on - strand, within LU632_RS03455 at 706.116 kb on + strand, within LU632_RS03455 at 706.163 kb on - strand, within LU632_RS03455 at 706.167 kb on + strand, within LU632_RS03455 at 706.177 kb on - strand, within LU632_RS03455 at 706.221 kb on + strand, within LU632_RS03455 at 706.323 kb on - strand, within LU632_RS03455 at 706.351 kb on + strand, within LU632_RS03455 at 706.351 kb on + strand, within LU632_RS03455 at 707.873 kb on + strand, within LU632_RS03465 at 707.873 kb on + strand, within LU632_RS03465 at 707.955 kb on - strand at 707.964 kb on + strand at 707.967 kb on + strand at 707.979 kb on - strand at 707.981 kb on - strand at 708.074 kb on + strand at 708.077 kb on + strand at 708.077 kb on + strand at 708.077 kb on + strand at 708.078 kb on - strand at 708.078 kb on - strand at 708.081 kb on + strand at 708.082 kb on - strand at 708.150 kb on - strand at 708.213 kb on - strand at 708.229 kb on - strand at 708.242 kb on + strand at 708.300 kb on + strand at 708.301 kb on - strand at 708.334 kb on + strand at 708.335 kb on - strand at 708.358 kb on + strand at 708.359 kb on - strand at 708.361 kb on - strand at 708.424 kb on + strand at 708.425 kb on - strand at 708.451 kb on + strand at 708.451 kb on + strand at 708.451 kb on + strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.452 kb on - strand at 708.491 kb on + strand at 708.533 kb on + strand, within LU632_RS03470 at 708.534 kb on - strand, within LU632_RS03470 at 708.551 kb on - strand, within LU632_RS03470 at 708.599 kb on + strand, within LU632_RS03470 at 708.703 kb on + strand, within LU632_RS03470 at 708.704 kb on - strand, within LU632_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 705,684 + LU632_RS03450 0.81 -1.1 705,684 + LU632_RS03450 0.81 -0.2 705,685 - LU632_RS03450 0.81 -0.7 705,721 - LU632_RS03450 0.83 +1.4 705,730 - LU632_RS03450 0.84 +1.5 705,732 + LU632_RS03450 0.84 +0.3 705,748 + LU632_RS03450 0.85 +0.3 705,748 + LU632_RS03450 0.85 +0.1 705,874 + -4.4 705,874 + -1.5 705,911 - -0.7 705,911 - -3.3 705,912 + +3.4 705,912 + -0.6 705,946 + -0.3 705,946 + +2.1 705,946 + +0.2 705,946 + +1.6 705,946 + -0.7 705,947 - -1.5 705,947 - +0.2 705,947 - -0.5 705,985 + +0.0 705,986 - +0.4 705,989 - -0.5 706,012 - -0.6 706,076 - LU632_RS03455 0.12 +0.5 706,076 - LU632_RS03455 0.12 -0.5 706,100 + LU632_RS03455 0.17 +1.2 706,101 - LU632_RS03455 0.17 -1.6 706,116 + LU632_RS03455 0.20 +0.3 706,163 - LU632_RS03455 0.30 +0.9 706,167 + LU632_RS03455 0.31 -0.1 706,177 - LU632_RS03455 0.33 -2.3 706,221 + LU632_RS03455 0.42 -0.2 706,323 - LU632_RS03455 0.64 +0.7 706,351 + LU632_RS03455 0.69 +0.2 706,351 + LU632_RS03455 0.69 -0.1 707,873 + LU632_RS03465 0.48 -1.6 707,873 + LU632_RS03465 0.48 -0.3 707,955 - -1.0 707,964 + +0.4 707,967 + -1.1 707,979 - +0.2 707,981 - -0.8 708,074 + +1.0 708,077 + -1.0 708,077 + +0.3 708,077 + -1.1 708,078 - -1.8 708,078 - -0.8 708,081 + +2.0 708,082 - +0.4 708,150 - +0.8 708,213 - -2.3 708,229 - +1.1 708,242 + +0.5 708,300 + +0.7 708,301 - +2.8 708,334 + +0.3 708,335 - +1.0 708,358 + +1.1 708,359 - -3.8 708,361 - +0.2 708,424 + +3.4 708,425 - +0.0 708,451 + -1.1 708,451 + -0.7 708,451 + -1.5 708,452 - +0.6 708,452 - -0.8 708,452 - +0.9 708,452 - -1.3 708,452 - -0.2 708,491 + -0.8 708,533 + LU632_RS03470 0.16 -0.1 708,534 - LU632_RS03470 0.16 -1.1 708,551 - LU632_RS03470 0.19 -0.1 708,599 + LU632_RS03470 0.29 -2.1 708,703 + LU632_RS03470 0.51 -1.6 708,704 - LU632_RS03470 0.51 -0.8
Or see this region's nucleotide sequence