Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02375 and LU632_RS02380 are separated by 37 nucleotides LU632_RS02380 and iolE overlap by 1 nucleotides iolE and LU632_RS02390 are separated by 399 nucleotides
LU632_RS02375: LU632_RS02375 - Gfo/Idh/MocA family oxidoreductase, at 469,660 to 470,673
_RS02375
LU632_RS02380: LU632_RS02380 - sugar phosphate isomerase/epimerase, at 470,711 to 471,619
_RS02380
LU632_RS02385: iolE - myo-inosose-2 dehydratase, at 471,619 to 472,518
iolE
LU632_RS02390: LU632_RS02390 - sugar porter family MFS transporter, at 472,918 to 474,420
_RS02390
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 470.690 kb on - strand at 470.693 kb on + strand at 470.694 kb on - strand at 470.694 kb on - strand at 470.703 kb on + strand at 470.703 kb on + strand at 470.769 kb on - strand at 470.795 kb on + strand at 470.795 kb on + strand at 470.795 kb on + strand at 470.796 kb on - strand at 470.834 kb on + strand, within LU632_RS02380 at 470.837 kb on - strand, within LU632_RS02380 at 470.837 kb on - strand, within LU632_RS02380 at 470.873 kb on + strand, within LU632_RS02380 at 470.952 kb on + strand, within LU632_RS02380 at 470.952 kb on + strand, within LU632_RS02380 at 470.953 kb on - strand, within LU632_RS02380 at 470.953 kb on - strand, within LU632_RS02380 at 471.221 kb on + strand, within LU632_RS02380 at 471.221 kb on + strand, within LU632_RS02380 at 471.221 kb on + strand, within LU632_RS02380 at 471.221 kb on + strand, within LU632_RS02380 at 471.222 kb on - strand, within LU632_RS02380 at 471.222 kb on - strand, within LU632_RS02380 at 471.222 kb on - strand, within LU632_RS02380 at 471.222 kb on - strand, within LU632_RS02380 at 471.222 kb on - strand, within LU632_RS02380 at 471.223 kb on + strand, within LU632_RS02380 at 471.223 kb on + strand, within LU632_RS02380 at 471.224 kb on - strand, within LU632_RS02380 at 471.227 kb on + strand, within LU632_RS02380 at 471.227 kb on + strand, within LU632_RS02380 at 471.227 kb on + strand, within LU632_RS02380 at 471.227 kb on + strand, within LU632_RS02380 at 471.228 kb on - strand, within LU632_RS02380 at 471.228 kb on - strand, within LU632_RS02380 at 471.228 kb on - strand, within LU632_RS02380 at 471.228 kb on - strand, within LU632_RS02380 at 471.242 kb on - strand, within LU632_RS02380 at 471.274 kb on - strand, within LU632_RS02380 at 471.274 kb on - strand, within LU632_RS02380 at 471.357 kb on - strand, within LU632_RS02380 at 471.358 kb on + strand, within LU632_RS02380 at 471.398 kb on + strand, within LU632_RS02380 at 471.675 kb on + strand at 471.675 kb on + strand at 471.676 kb on - strand at 471.676 kb on - strand at 471.676 kb on - strand at 471.821 kb on + strand, within iolE at 471.822 kb on - strand, within iolE at 471.822 kb on - strand, within iolE at 471.825 kb on + strand, within iolE at 471.825 kb on + strand, within iolE at 471.825 kb on + strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 471.826 kb on - strand, within iolE at 472.036 kb on + strand, within iolE at 472.037 kb on - strand, within iolE at 472.037 kb on - strand, within iolE at 472.131 kb on + strand, within iolE at 472.250 kb on + strand, within iolE at 472.397 kb on + strand, within iolE at 472.411 kb on + strand, within iolE at 472.411 kb on + strand, within iolE at 472.472 kb on - strand at 472.513 kb on - strand at 472.517 kb on - strand at 472.517 kb on - strand at 472.884 kb on + strand at 472.885 kb on - strand at 472.890 kb on + strand at 472.894 kb on - strand at 472.914 kb on + strand at 472.914 kb on + strand at 472.917 kb on + strand at 472.917 kb on + strand at 472.933 kb on + strand at 472.934 kb on - strand at 473.012 kb on + strand at 473.039 kb on - strand at 473.103 kb on + strand, within LU632_RS02390 at 473.104 kb on - strand, within LU632_RS02390 at 473.104 kb on - strand, within LU632_RS02390 at 473.159 kb on + strand, within LU632_RS02390 at 473.332 kb on + strand, within LU632_RS02390 at 473.359 kb on - strand, within LU632_RS02390 at 473.377 kb on - strand, within LU632_RS02390 at 473.377 kb on - strand, within LU632_RS02390 at 473.419 kb on + strand, within LU632_RS02390 at 473.422 kb on - strand, within LU632_RS02390
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 470,690 - +0.6 470,693 + +0.8 470,694 - +0.2 470,694 - -0.4 470,703 + -0.3 470,703 + +0.2 470,769 - -0.7 470,795 + -1.5 470,795 + -2.4 470,795 + -1.2 470,796 - -1.1 470,834 + LU632_RS02380 0.14 -0.9 470,837 - LU632_RS02380 0.14 +0.5 470,837 - LU632_RS02380 0.14 -0.5 470,873 + LU632_RS02380 0.18 -1.7 470,952 + LU632_RS02380 0.27 +0.4 470,952 + LU632_RS02380 0.27 +0.7 470,953 - LU632_RS02380 0.27 +0.9 470,953 - LU632_RS02380 0.27 +1.2 471,221 + LU632_RS02380 0.56 +0.7 471,221 + LU632_RS02380 0.56 +0.8 471,221 + LU632_RS02380 0.56 +0.5 471,221 + LU632_RS02380 0.56 +0.8 471,222 - LU632_RS02380 0.56 -0.7 471,222 - LU632_RS02380 0.56 -1.9 471,222 - LU632_RS02380 0.56 -0.5 471,222 - LU632_RS02380 0.56 -0.7 471,222 - LU632_RS02380 0.56 +0.4 471,223 + LU632_RS02380 0.56 +0.8 471,223 + LU632_RS02380 0.56 +0.4 471,224 - LU632_RS02380 0.56 -0.1 471,227 + LU632_RS02380 0.57 -0.3 471,227 + LU632_RS02380 0.57 -0.6 471,227 + LU632_RS02380 0.57 +0.2 471,227 + LU632_RS02380 0.57 -0.7 471,228 - LU632_RS02380 0.57 +0.6 471,228 - LU632_RS02380 0.57 +0.5 471,228 - LU632_RS02380 0.57 -1.2 471,228 - LU632_RS02380 0.57 +0.1 471,242 - LU632_RS02380 0.58 +0.4 471,274 - LU632_RS02380 0.62 +0.7 471,274 - LU632_RS02380 0.62 -1.2 471,357 - LU632_RS02380 0.71 +0.3 471,358 + LU632_RS02380 0.71 +3.8 471,398 + LU632_RS02380 0.76 -1.0 471,675 + +0.7 471,675 + +0.1 471,676 - -0.4 471,676 - +0.8 471,676 - +0.5 471,821 + iolE LU632_RS02385 0.22 -2.5 471,822 - iolE LU632_RS02385 0.23 -1.5 471,822 - iolE LU632_RS02385 0.23 +0.1 471,825 + iolE LU632_RS02385 0.23 -1.3 471,825 + iolE LU632_RS02385 0.23 -0.5 471,825 + iolE LU632_RS02385 0.23 -0.3 471,826 - iolE LU632_RS02385 0.23 -0.5 471,826 - iolE LU632_RS02385 0.23 +1.2 471,826 - iolE LU632_RS02385 0.23 -0.9 471,826 - iolE LU632_RS02385 0.23 +0.8 471,826 - iolE LU632_RS02385 0.23 -3.6 471,826 - iolE LU632_RS02385 0.23 -2.2 471,826 - iolE LU632_RS02385 0.23 -2.3 471,826 - iolE LU632_RS02385 0.23 -0.1 471,826 - iolE LU632_RS02385 0.23 -1.1 471,826 - iolE LU632_RS02385 0.23 -0.3 472,036 + iolE LU632_RS02385 0.46 -0.3 472,037 - iolE LU632_RS02385 0.46 +2.1 472,037 - iolE LU632_RS02385 0.46 -0.7 472,131 + iolE LU632_RS02385 0.57 +0.2 472,250 + iolE LU632_RS02385 0.70 -2.9 472,397 + iolE LU632_RS02385 0.86 +1.1 472,411 + iolE LU632_RS02385 0.88 +1.2 472,411 + iolE LU632_RS02385 0.88 -0.9 472,472 - +0.8 472,513 - +0.5 472,517 - +0.1 472,517 - +1.0 472,884 + +0.6 472,885 - -0.2 472,890 + +1.8 472,894 - -0.4 472,914 + -1.1 472,914 + -1.5 472,917 + +0.3 472,917 + -1.3 472,933 + +1.0 472,934 - +1.4 473,012 + -2.6 473,039 - -0.5 473,103 + LU632_RS02390 0.12 +0.0 473,104 - LU632_RS02390 0.12 +0.3 473,104 - LU632_RS02390 0.12 -0.0 473,159 + LU632_RS02390 0.16 +0.8 473,332 + LU632_RS02390 0.28 +1.3 473,359 - LU632_RS02390 0.29 -1.9 473,377 - LU632_RS02390 0.31 +0.4 473,377 - LU632_RS02390 0.31 -1.0 473,419 + LU632_RS02390 0.33 +1.5 473,422 - LU632_RS02390 0.34 +0.3
Or see this region's nucleotide sequence