Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02110 and LU632_RS02115 are separated by 2 nucleotides LU632_RS02115 and ppa are separated by 304 nucleotides
LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213
_RS02110
LU632_RS02115: LU632_RS02115 - gamma-glutamylcyclotransferase, at 419,216 to 419,569
_RS02115
LU632_RS02120: ppa - inorganic diphosphatase, at 419,874 to 420,404
ppa
Position (kb) 419
420 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 418.290 kb on - strand, within LU632_RS02110 at 418.456 kb on + strand, within LU632_RS02110 at 418.457 kb on - strand, within LU632_RS02110 at 418.457 kb on - strand, within LU632_RS02110 at 418.511 kb on + strand, within LU632_RS02110 at 418.518 kb on - strand, within LU632_RS02110 at 418.518 kb on - strand, within LU632_RS02110 at 418.544 kb on + strand, within LU632_RS02110 at 418.591 kb on + strand, within LU632_RS02110 at 418.778 kb on + strand, within LU632_RS02110 at 418.822 kb on + strand, within LU632_RS02110 at 418.823 kb on - strand, within LU632_RS02110 at 418.869 kb on + strand at 418.869 kb on + strand at 418.869 kb on + strand at 418.870 kb on - strand at 418.922 kb on - strand at 418.922 kb on - strand at 419.001 kb on - strand at 419.001 kb on - strand at 419.080 kb on + strand at 419.080 kb on + strand at 419.144 kb on + strand at 419.149 kb on + strand at 419.150 kb on - strand at 419.151 kb on + strand at 419.322 kb on - strand, within LU632_RS02115 at 419.635 kb on + strand at 419.641 kb on + strand at 419.642 kb on - strand at 419.680 kb on + strand at 419.802 kb on - strand at 420.471 kb on - strand at 420.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 418,290 - LU632_RS02110 0.75 -0.3 418,456 + LU632_RS02110 0.80 +0.6 418,457 - LU632_RS02110 0.80 +1.8 418,457 - LU632_RS02110 0.80 +1.8 418,511 + LU632_RS02110 0.81 +0.2 418,518 - LU632_RS02110 0.82 +0.2 418,518 - LU632_RS02110 0.82 +5.0 418,544 + LU632_RS02110 0.82 -1.7 418,591 + LU632_RS02110 0.83 +1.3 418,778 + LU632_RS02110 0.88 +0.5 418,822 + LU632_RS02110 0.90 +0.3 418,823 - LU632_RS02110 0.90 +0.9 418,869 + +0.1 418,869 + -1.3 418,869 + +0.4 418,870 - +1.1 418,922 - -0.1 418,922 - -1.5 419,001 - -0.7 419,001 - -0.2 419,080 + +2.5 419,080 + +1.3 419,144 + +1.0 419,149 + -2.0 419,150 - -1.7 419,151 + +0.4 419,322 - LU632_RS02115 0.30 +1.8 419,635 + -0.7 419,641 + -1.0 419,642 - +0.5 419,680 + +0.5 419,802 - +0.2 420,471 - -0.5 420,561 - -1.5
Or see this region's nucleotide sequence