Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01475 and LU632_RS01480 are separated by 84 nucleotides LU632_RS01480 and LU632_RS01485 are separated by 105 nucleotides LU632_RS01485 and LU632_RS01490 are separated by 126 nucleotides LU632_RS01490 and LU632_RS01495 overlap by 2 nucleotides LU632_RS01495 and LU632_RS01500 are separated by 231 nucleotides LU632_RS01500 and LU632_RS01505 overlap by 32 nucleotides
LU632_RS01475: LU632_RS01475 - tyrosine-type recombinase/integrase, at 301,719 to 302,738
_RS01475
LU632_RS01480: LU632_RS01480 - helix-turn-helix domain-containing protein, at 302,823 to 303,104
_RS01480
LU632_RS01485: LU632_RS01485 - hypothetical protein, at 303,210 to 303,479
_RS01485
LU632_RS01490: LU632_RS01490 - IS91 family transposase, at 303,606 to 304,829
_RS01490
LU632_RS01495: LU632_RS01495 - hypothetical protein, at 304,828 to 305,094
_RS01495
LU632_RS01500: LU632_RS01500 - hypothetical protein, at 305,326 to 305,508
_RS01500
LU632_RS01505: LU632_RS01505 - hypothetical protein, at 305,477 to 305,716
_RS01505
Position (kb) 303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 302.626 kb on + strand, within LU632_RS01475 at 302.627 kb on - strand, within LU632_RS01475 at 302.627 kb on - strand, within LU632_RS01475 at 302.694 kb on + strand at 302.694 kb on + strand at 302.695 kb on - strand at 302.695 kb on - strand at 302.695 kb on - strand at 302.695 kb on - strand at 302.738 kb on + strand at 302.739 kb on - strand at 302.798 kb on + strand at 302.798 kb on + strand at 302.799 kb on - strand at 302.799 kb on - strand at 302.802 kb on + strand at 302.806 kb on + strand at 302.853 kb on - strand, within LU632_RS01480 at 302.945 kb on + strand, within LU632_RS01480 at 302.958 kb on - strand, within LU632_RS01480 at 302.995 kb on + strand, within LU632_RS01480 at 302.996 kb on - strand, within LU632_RS01480 at 303.073 kb on - strand, within LU632_RS01480 at 303.174 kb on + strand at 303.378 kb on + strand, within LU632_RS01485 at 304.951 kb on + strand, within LU632_RS01495 at 304.956 kb on - strand, within LU632_RS01495 at 305.009 kb on + strand, within LU632_RS01495 at 305.010 kb on - strand, within LU632_RS01495 at 305.101 kb on + strand at 305.132 kb on + strand at 305.133 kb on - strand at 305.143 kb on + strand at 305.167 kb on - strand at 305.167 kb on - strand at 305.167 kb on - strand at 305.234 kb on - strand at 305.244 kb on + strand at 305.262 kb on - strand at 305.320 kb on + strand at 305.525 kb on + strand, within LU632_RS01505 at 305.567 kb on + strand, within LU632_RS01505 at 305.749 kb on - strand at 305.755 kb on - strand at 305.755 kb on - strand at 305.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 302,626 + LU632_RS01475 0.89 +0.5 302,627 - LU632_RS01475 0.89 -1.3 302,627 - LU632_RS01475 0.89 +0.2 302,694 + +0.5 302,694 + +2.7 302,695 - -1.5 302,695 - -0.2 302,695 - -1.0 302,695 - -0.4 302,738 + +0.1 302,739 - +0.2 302,798 + +0.6 302,798 + +0.2 302,799 - -0.1 302,799 - -2.7 302,802 + -0.1 302,806 + +2.1 302,853 - LU632_RS01480 0.11 +0.3 302,945 + LU632_RS01480 0.43 -3.5 302,958 - LU632_RS01480 0.48 +0.3 302,995 + LU632_RS01480 0.61 -0.5 302,996 - LU632_RS01480 0.61 -0.5 303,073 - LU632_RS01480 0.89 -0.9 303,174 + -1.0 303,378 + LU632_RS01485 0.62 +0.3 304,951 + LU632_RS01495 0.46 +1.2 304,956 - LU632_RS01495 0.48 -0.8 305,009 + LU632_RS01495 0.68 +0.6 305,010 - LU632_RS01495 0.68 +1.5 305,101 + -1.6 305,132 + -0.1 305,133 - -0.7 305,143 + +1.1 305,167 - -1.2 305,167 - -2.1 305,167 - -0.8 305,234 - -1.2 305,244 + +0.7 305,262 - -0.2 305,320 + +1.6 305,525 + LU632_RS01505 0.20 +2.4 305,567 + LU632_RS01505 0.38 -0.7 305,749 - +1.3 305,755 - +1.3 305,755 - +0.2 305,780 - -0.5
Or see this region's nucleotide sequence