Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00995 and hupA are separated by 188 nucleotides hupA and tnpA are separated by 167 nucleotides tnpA and LU632_RS01010 are separated by 190 nucleotides LU632_RS01010 and purD are separated by 163 nucleotides
LU632_RS00995: LU632_RS00995 - YjaG family protein, at 215,333 to 215,923
_RS00995
LU632_RS01000: hupA - DNA-binding protein HU-alpha, at 216,112 to 216,384
hupA
LU632_RS01005: tnpA - IS200/IS605 family transposase, at 216,552 to 216,992
tnpA
LU632_RS01010: LU632_RS01010 - sugar phosphate isomerase/epimerase, at 217,183 to 217,332
_RS01010
LU632_RS01015: purD - phosphoribosylamine--glycine ligase, at 217,496 to 218,776
purD
Position (kb) 216
217 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 215.585 kb on + strand, within LU632_RS00995 at 215.595 kb on - strand, within LU632_RS00995 at 215.603 kb on + strand, within LU632_RS00995 at 215.656 kb on - strand, within LU632_RS00995 at 215.856 kb on + strand, within LU632_RS00995 at 215.856 kb on + strand, within LU632_RS00995 at 215.856 kb on + strand, within LU632_RS00995 at 215.857 kb on - strand, within LU632_RS00995 at 215.955 kb on + strand at 215.994 kb on - strand at 216.032 kb on + strand at 216.032 kb on + strand at 216.033 kb on - strand at 216.093 kb on + strand at 216.093 kb on + strand at 216.094 kb on - strand at 216.094 kb on - strand at 216.094 kb on - strand at 216.112 kb on - strand at 216.137 kb on + strand at 216.174 kb on + strand, within hupA at 216.261 kb on + strand, within hupA at 216.262 kb on - strand, within hupA at 216.378 kb on + strand at 216.382 kb on + strand at 216.382 kb on + strand at 216.406 kb on + strand at 217.164 kb on + strand at 217.196 kb on - strand at 217.247 kb on - strand, within LU632_RS01010 at 217.253 kb on + strand, within LU632_RS01010 at 217.268 kb on - strand, within LU632_RS01010 at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.371 kb on - strand at 217.371 kb on - strand at 217.377 kb on + strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.379 kb on + strand at 217.385 kb on + strand at 217.385 kb on + strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.401 kb on + strand at 217.402 kb on - strand at 217.402 kb on - strand at 217.574 kb on - strand at 217.575 kb on + strand at 217.575 kb on + strand at 217.575 kb on + strand at 217.576 kb on - strand at 217.628 kb on + strand, within purD at 217.628 kb on + strand, within purD at 217.690 kb on + strand, within purD at 217.743 kb on + strand, within purD at 217.743 kb on + strand, within purD at 217.744 kb on - strand, within purD at 217.773 kb on - strand, within purD at 217.833 kb on - strand, within purD at 217.915 kb on + strand, within purD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 215,585 + LU632_RS00995 0.43 -3.9 215,595 - LU632_RS00995 0.44 -1.8 215,603 + LU632_RS00995 0.46 +0.3 215,656 - LU632_RS00995 0.55 +1.3 215,856 + LU632_RS00995 0.88 +0.2 215,856 + LU632_RS00995 0.88 -0.7 215,856 + LU632_RS00995 0.88 -0.4 215,857 - LU632_RS00995 0.89 +0.5 215,955 + -0.9 215,994 - -1.6 216,032 + -0.1 216,032 + -0.6 216,033 - +0.3 216,093 + -1.3 216,093 + -1.1 216,094 - -1.0 216,094 - -2.2 216,094 - -3.9 216,112 - -1.0 216,137 + +0.6 216,174 + hupA LU632_RS01000 0.23 -0.2 216,261 + hupA LU632_RS01000 0.55 -2.1 216,262 - hupA LU632_RS01000 0.55 +0.0 216,378 + -0.2 216,382 + -0.6 216,382 + -0.7 216,406 + -1.0 217,164 + +1.3 217,196 - +2.5 217,247 - LU632_RS01010 0.43 +0.1 217,253 + LU632_RS01010 0.47 +1.5 217,268 - LU632_RS01010 0.57 -1.5 217,370 + +2.4 217,370 + +0.5 217,370 + -0.5 217,370 + -0.1 217,370 + -1.3 217,371 - -2.1 217,371 - +1.1 217,377 + +0.5 217,378 - -0.1 217,378 - +0.3 217,378 - +0.4 217,379 + -0.4 217,385 + +0.9 217,385 + -1.8 217,386 - -2.3 217,386 - -0.6 217,386 - -1.5 217,386 - +0.1 217,401 + +0.7 217,402 - +0.7 217,402 - +0.4 217,574 - -3.7 217,575 + -2.7 217,575 + -0.5 217,575 + -1.1 217,576 - -5.2 217,628 + purD LU632_RS01015 0.10 +1.9 217,628 + purD LU632_RS01015 0.10 -5.2 217,690 + purD LU632_RS01015 0.15 -1.8 217,743 + purD LU632_RS01015 0.19 -4.9 217,743 + purD LU632_RS01015 0.19 -0.1 217,744 - purD LU632_RS01015 0.19 -4.2 217,773 - purD LU632_RS01015 0.22 -3.2 217,833 - purD LU632_RS01015 0.26 +0.3 217,915 + purD LU632_RS01015 0.33 -3.1
Or see this region's nucleotide sequence