Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00300

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00290 and LU632_RS00295 are separated by 31 nucleotidesLU632_RS00295 and LU632_RS00300 are separated by 218 nucleotidesLU632_RS00300 and LU632_RS00305 are separated by 156 nucleotides LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620 _RS00290 LU632_RS00295: LU632_RS00295 - IS1 family transposase, at 59,652 to 60,349 _RS00295 LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599 _RS00300 LU632_RS00305: LU632_RS00305 - glycosyl hydrolase family 8, at 61,756 to 62,675 _RS00305 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.570 kb on - strandat 59.582 kb on - strandat 60.380 kb on + strandat 60.381 kb on - strandat 60.383 kb on + strandat 60.383 kb on + strandat 60.384 kb on - strandat 60.387 kb on + strandat 60.405 kb on - strandat 60.428 kb on + strandat 60.428 kb on + strandat 60.428 kb on + strandat 60.432 kb on - strandat 60.432 kb on - strandat 60.470 kb on - strandat 60.470 kb on - strandat 60.499 kb on - strandat 60.519 kb on - strandat 60.735 kb on - strand, within LU632_RS00300at 60.735 kb on - strand, within LU632_RS00300at 60.735 kb on - strand, within LU632_RS00300at 60.748 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.889 kb on + strand, within LU632_RS00300at 60.890 kb on - strand, within LU632_RS00300at 60.918 kb on + strand, within LU632_RS00300at 60.918 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.025 kb on + strand, within LU632_RS00300at 61.026 kb on - strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.181 kb on + strand, within LU632_RS00300at 61.183 kb on + strand, within LU632_RS00300at 61.184 kb on - strand, within LU632_RS00300at 61.243 kb on - strand, within LU632_RS00300at 61.274 kb on + strand, within LU632_RS00300at 61.275 kb on - strand, within LU632_RS00300at 61.277 kb on - strand, within LU632_RS00300at 61.284 kb on + strand, within LU632_RS00300at 61.387 kb on + strand, within LU632_RS00300at 61.406 kb on + strand, within LU632_RS00300at 61.427 kb on - strand, within LU632_RS00300at 61.430 kb on - strand, within LU632_RS00300at 61.430 kb on - strand, within LU632_RS00300at 61.557 kb on + strandat 61.727 kb on + strandat 61.727 kb on + strandat 61.728 kb on - strandat 61.728 kb on - strandat 61.854 kb on + strand, within LU632_RS00305at 61.854 kb on + strand, within LU632_RS00305at 61.855 kb on - strand, within LU632_RS00305at 61.857 kb on + strand, within LU632_RS00305at 61.858 kb on - strand, within LU632_RS00305at 61.859 kb on + strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.860 kb on - strand, within LU632_RS00305at 61.909 kb on - strand, within LU632_RS00305at 61.956 kb on - strand, within LU632_RS00305at 62.071 kb on - strand, within LU632_RS00305at 62.077 kb on + strand, within LU632_RS00305at 62.145 kb on - strand, within LU632_RS00305at 62.145 kb on - strand, within LU632_RS00305at 62.155 kb on + strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.188 kb on - strand, within LU632_RS00305at 62.392 kb on + strand, within LU632_RS00305at 62.392 kb on + strand, within LU632_RS00305at 62.393 kb on - strand, within LU632_RS00305at 62.416 kb on + strand, within LU632_RS00305at 62.482 kb on + strand, within LU632_RS00305at 62.491 kb on - strand, within LU632_RS00305at 62.523 kb on - strand, within LU632_RS00305at 62.523 kb on - strand, within LU632_RS00305at 62.525 kb on + strand, within LU632_RS00305at 62.526 kb on - strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.537 kb on + strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305at 62.538 kb on - strand, within LU632_RS00305

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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59,570 - +0.9
59,582 - -0.3
60,380 + +0.7
60,381 - +2.0
60,383 + -0.7
60,383 + -0.7
60,384 - -1.1
60,387 + -1.4
60,405 - +1.3
60,428 + +0.7
60,428 + +0.9
60,428 + -0.1
60,432 - -0.0
60,432 - -2.2
60,470 - +2.0
60,470 - -1.5
60,499 - +1.3
60,519 - -0.5
60,735 - LU632_RS00300 0.16 -0.9
60,735 - LU632_RS00300 0.16 -0.3
60,735 - LU632_RS00300 0.16 -1.3
60,748 + LU632_RS00300 0.17 +1.2
60,889 + LU632_RS00300 0.31 +0.4
60,889 + LU632_RS00300 0.31 +1.9
60,889 + LU632_RS00300 0.31 -1.6
60,889 + LU632_RS00300 0.31 -1.3
60,889 + LU632_RS00300 0.31 +0.4
60,890 - LU632_RS00300 0.31 -0.5
60,918 + LU632_RS00300 0.34 -3.1
60,918 + LU632_RS00300 0.34 +0.8
61,025 + LU632_RS00300 0.44 +0.5
61,025 + LU632_RS00300 0.44 +0.3
61,025 + LU632_RS00300 0.44 -1.6
61,025 + LU632_RS00300 0.44 -0.1
61,025 + LU632_RS00300 0.44 +0.1
61,026 - LU632_RS00300 0.44 +0.3
61,181 + LU632_RS00300 0.59 +2.3
61,181 + LU632_RS00300 0.59 -0.5
61,181 + LU632_RS00300 0.59 +0.9
61,183 + LU632_RS00300 0.60 -0.8
61,184 - LU632_RS00300 0.60 +0.4
61,243 - LU632_RS00300 0.65 +0.5
61,274 + LU632_RS00300 0.68 +1.2
61,275 - LU632_RS00300 0.69 -0.7
61,277 - LU632_RS00300 0.69 -0.0
61,284 + LU632_RS00300 0.69 -1.6
61,387 + LU632_RS00300 0.79 +1.1
61,406 + LU632_RS00300 0.81 -1.8
61,427 - LU632_RS00300 0.83 +2.3
61,430 - LU632_RS00300 0.84 -0.9
61,430 - LU632_RS00300 0.84 -1.9
61,557 + -0.8
61,727 + -0.7
61,727 + +0.3
61,728 - +1.1
61,728 - +0.5
61,854 + LU632_RS00305 0.11 +0.6
61,854 + LU632_RS00305 0.11 +0.2
61,855 - LU632_RS00305 0.11 +1.0
61,857 + LU632_RS00305 0.11 -0.6
61,858 - LU632_RS00305 0.11 -0.3
61,859 + LU632_RS00305 0.11 -1.7
61,860 - LU632_RS00305 0.11 +0.1
61,860 - LU632_RS00305 0.11 +0.2
61,860 - LU632_RS00305 0.11 -0.8
61,860 - LU632_RS00305 0.11 +0.4
61,909 - LU632_RS00305 0.17 +1.3
61,956 - LU632_RS00305 0.22 +1.1
62,071 - LU632_RS00305 0.34 -1.0
62,077 + LU632_RS00305 0.35 +0.2
62,145 - LU632_RS00305 0.42 +2.4
62,145 - LU632_RS00305 0.42 +1.1
62,155 + LU632_RS00305 0.43 -0.4
62,188 - LU632_RS00305 0.47 -1.5
62,188 - LU632_RS00305 0.47 -1.0
62,188 - LU632_RS00305 0.47 +0.7
62,392 + LU632_RS00305 0.69 +1.9
62,392 + LU632_RS00305 0.69 +0.7
62,393 - LU632_RS00305 0.69 +0.7
62,416 + LU632_RS00305 0.72 +2.5
62,482 + LU632_RS00305 0.79 -0.6
62,491 - LU632_RS00305 0.80 -0.2
62,523 - LU632_RS00305 0.83 +0.2
62,523 - LU632_RS00305 0.83 +0.2
62,525 + LU632_RS00305 0.84 -2.3
62,526 - LU632_RS00305 0.84 -0.0
62,537 + LU632_RS00305 0.85 -1.8
62,537 + LU632_RS00305 0.85 +0.3
62,537 + LU632_RS00305 0.85 +0.7
62,537 + LU632_RS00305 0.85 -2.6
62,537 + LU632_RS00305 0.85 +0.5
62,538 - LU632_RS00305 0.85 -1.8
62,538 - LU632_RS00305 0.85 -0.0
62,538 - LU632_RS00305 0.85 -0.0
62,538 - LU632_RS00305 0.85 +1.9
62,538 - LU632_RS00305 0.85 -2.8

Or see this region's nucleotide sequence