Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20680

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS20675 and ABI39_RS20680 are separated by 168 nucleotidesABI39_RS20680 and ABI39_RS20685 are separated by 367 nucleotides ABI39_RS20675: ABI39_RS20675 - hypothetical protein, at 5,098,005 to 5,099,888 _RS20675 ABI39_RS20680: ABI39_RS20680 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 5,100,057 to 5,101,901 _RS20680 ABI39_RS20685: ABI39_RS20685 - glutamate synthase large subunit, at 5,102,269 to 5,106,747 _RS20685 Position (kb) 5100 5101 5102Strain fitness (log2 ratio) -2 -1 0 1at 5099.354 kb on + strand, within ABI39_RS20675at 5099.360 kb on - strand, within ABI39_RS20675at 5099.501 kb on - strand, within ABI39_RS20675at 5099.548 kb on + strand, within ABI39_RS20675at 5099.548 kb on + strand, within ABI39_RS20675at 5099.691 kb on - strand, within ABI39_RS20675at 5099.692 kb on + strand, within ABI39_RS20675at 5099.779 kb on + strandat 5099.911 kb on + strandat 5100.138 kb on + strandat 5100.138 kb on + strandat 5100.159 kb on + strandat 5100.160 kb on - strandat 5100.324 kb on - strand, within ABI39_RS20680at 5100.324 kb on - strand, within ABI39_RS20680at 5100.410 kb on + strand, within ABI39_RS20680at 5100.412 kb on + strand, within ABI39_RS20680at 5100.413 kb on - strand, within ABI39_RS20680at 5100.413 kb on - strand, within ABI39_RS20680at 5100.497 kb on - strand, within ABI39_RS20680at 5100.507 kb on - strand, within ABI39_RS20680at 5100.660 kb on + strand, within ABI39_RS20680at 5100.716 kb on + strand, within ABI39_RS20680at 5100.716 kb on + strand, within ABI39_RS20680at 5100.768 kb on + strand, within ABI39_RS20680at 5100.769 kb on - strand, within ABI39_RS20680at 5100.780 kb on - strand, within ABI39_RS20680at 5100.852 kb on + strand, within ABI39_RS20680at 5100.852 kb on + strand, within ABI39_RS20680at 5100.908 kb on - strand, within ABI39_RS20680at 5100.996 kb on + strand, within ABI39_RS20680at 5101.050 kb on + strand, within ABI39_RS20680at 5101.059 kb on - strand, within ABI39_RS20680at 5101.292 kb on + strand, within ABI39_RS20680at 5101.350 kb on + strand, within ABI39_RS20680at 5101.382 kb on + strand, within ABI39_RS20680at 5101.473 kb on + strand, within ABI39_RS20680at 5101.533 kb on - strand, within ABI39_RS20680at 5101.608 kb on - strand, within ABI39_RS20680at 5101.788 kb on - strandat 5101.825 kb on + strandat 5101.848 kb on + strandat 5101.902 kb on - strandat 5101.911 kb on - strandat 5101.914 kb on + strandat 5101.915 kb on - strandat 5101.915 kb on - strandat 5101.940 kb on + strandat 5101.968 kb on - strandat 5102.101 kb on + strandat 5102.135 kb on - strandat 5102.256 kb on - strandat 5102.330 kb on + strandat 5102.330 kb on + strandat 5102.334 kb on + strandat 5102.461 kb on - strandat 5102.466 kb on - strandat 5102.580 kb on - strandat 5102.584 kb on - strandat 5102.600 kb on + strandat 5102.742 kb on + strand, within ABI39_RS20685at 5102.750 kb on - strand, within ABI39_RS20685at 5102.827 kb on - strand, within ABI39_RS20685at 5102.890 kb on + strand, within ABI39_RS20685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,099,354 + ABI39_RS20675 0.72 -1.0
5,099,360 - ABI39_RS20675 0.72 +0.0
5,099,501 - ABI39_RS20675 0.79 +1.0
5,099,548 + ABI39_RS20675 0.82 -1.1
5,099,548 + ABI39_RS20675 0.82 -0.4
5,099,691 - ABI39_RS20675 0.89 -0.2
5,099,692 + ABI39_RS20675 0.90 -0.8
5,099,779 + -0.8
5,099,911 + -1.0
5,100,138 + -0.8
5,100,138 + -1.4
5,100,159 + -1.4
5,100,160 - -0.8
5,100,324 - ABI39_RS20680 0.14 +0.5
5,100,324 - ABI39_RS20680 0.14 -0.0
5,100,410 + ABI39_RS20680 0.19 -1.1
5,100,412 + ABI39_RS20680 0.19 -0.7
5,100,413 - ABI39_RS20680 0.19 +0.4
5,100,413 - ABI39_RS20680 0.19 +0.4
5,100,497 - ABI39_RS20680 0.24 +0.1
5,100,507 - ABI39_RS20680 0.24 -0.1
5,100,660 + ABI39_RS20680 0.33 -1.1
5,100,716 + ABI39_RS20680 0.36 -1.3
5,100,716 + ABI39_RS20680 0.36 -1.1
5,100,768 + ABI39_RS20680 0.39 -1.2
5,100,769 - ABI39_RS20680 0.39 -0.1
5,100,780 - ABI39_RS20680 0.39 +0.3
5,100,852 + ABI39_RS20680 0.43 -1.1
5,100,852 + ABI39_RS20680 0.43 +0.1
5,100,908 - ABI39_RS20680 0.46 +0.1
5,100,996 + ABI39_RS20680 0.51 -1.5
5,101,050 + ABI39_RS20680 0.54 -0.5
5,101,059 - ABI39_RS20680 0.54 +0.2
5,101,292 + ABI39_RS20680 0.67 -1.9
5,101,350 + ABI39_RS20680 0.70 -0.5
5,101,382 + ABI39_RS20680 0.72 -1.2
5,101,473 + ABI39_RS20680 0.77 -0.7
5,101,533 - ABI39_RS20680 0.80 +0.4
5,101,608 - ABI39_RS20680 0.84 -0.4
5,101,788 - -1.4
5,101,825 + -0.7
5,101,848 + -1.0
5,101,902 - -1.1
5,101,911 - -0.5
5,101,914 + -0.9
5,101,915 - -0.4
5,101,915 - -0.2
5,101,940 + -0.8
5,101,968 - +0.1
5,102,101 + +0.3
5,102,135 - -1.5
5,102,256 - -0.9
5,102,330 + +0.4
5,102,330 + +0.6
5,102,334 + -0.4
5,102,461 - -0.5
5,102,466 - -0.0
5,102,580 - -0.0
5,102,584 - -0.2
5,102,600 + +1.0
5,102,742 + ABI39_RS20685 0.11 -0.1
5,102,750 - ABI39_RS20685 0.11 -0.2
5,102,827 - ABI39_RS20685 0.12 -0.0
5,102,890 + ABI39_RS20685 0.14 -0.1

Or see this region's nucleotide sequence