Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04432

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_04431 and OHPLBJKB_04432 are separated by 385 nucleotidesOHPLBJKB_04432 and OHPLBJKB_04433 overlap by 19 nucleotides OHPLBJKB_04431: OHPLBJKB_04431 - DNA adenine methyltransferase YhdJ, at 79,258 to 79,941 _04431 OHPLBJKB_04432: OHPLBJKB_04432 - hypothetical protein, at 80,327 to 80,764 _04432 OHPLBJKB_04433: OHPLBJKB_04433 - hypothetical protein, at 80,746 to 81,252 _04433 Position (kb) 80 81Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 79.379 kb on + strand, within OHPLBJKB_04431at 79.380 kb on - strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.595 kb on + strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.596 kb on - strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.622 kb on + strand, within OHPLBJKB_04431at 79.640 kb on + strand, within OHPLBJKB_04431at 79.640 kb on + strand, within OHPLBJKB_04431at 79.640 kb on + strand, within OHPLBJKB_04431at 79.651 kb on - strand, within OHPLBJKB_04431at 79.728 kb on - strand, within OHPLBJKB_04431at 79.767 kb on - strand, within OHPLBJKB_04431at 79.767 kb on - strand, within OHPLBJKB_04431at 79.776 kb on + strand, within OHPLBJKB_04431at 79.822 kb on - strand, within OHPLBJKB_04431at 79.854 kb on - strand, within OHPLBJKB_04431at 79.929 kb on + strandat 79.941 kb on + strandat 79.941 kb on + strandat 79.941 kb on + strandat 79.942 kb on - strandat 80.142 kb on + strandat 80.256 kb on - strandat 80.323 kb on + strandat 80.323 kb on + strandat 80.323 kb on + strandat 80.323 kb on + strandat 80.324 kb on - strandat 80.324 kb on - strandat 80.457 kb on + strand, within OHPLBJKB_04432at 80.458 kb on - strand, within OHPLBJKB_04432at 80.531 kb on + strand, within OHPLBJKB_04432at 80.531 kb on + strand, within OHPLBJKB_04432at 80.532 kb on - strand, within OHPLBJKB_04432at 80.534 kb on + strand, within OHPLBJKB_04432at 80.534 kb on + strand, within OHPLBJKB_04432at 80.625 kb on + strand, within OHPLBJKB_04432at 80.650 kb on - strand, within OHPLBJKB_04432at 80.659 kb on + strand, within OHPLBJKB_04432at 80.812 kb on + strand, within OHPLBJKB_04433at 80.812 kb on + strand, within OHPLBJKB_04433at 80.813 kb on - strand, within OHPLBJKB_04433at 80.978 kb on - strand, within OHPLBJKB_04433at 80.978 kb on - strand, within OHPLBJKB_04433at 80.978 kb on - strand, within OHPLBJKB_04433at 80.978 kb on - strand, within OHPLBJKB_04433at 81.133 kb on - strand, within OHPLBJKB_04433at 81.224 kb on + strandat 81.224 kb on + strandat 81.228 kb on + strandat 81.228 kb on + strandat 81.317 kb on + strandat 81.458 kb on + strandat 81.458 kb on + strandat 81.471 kb on + strandat 81.471 kb on + strandat 81.471 kb on + strandat 81.496 kb on - strandat 81.528 kb on + strandat 81.528 kb on + strandat 81.529 kb on - strandat 81.529 kb on - strandat 81.529 kb on - strandat 81.529 kb on - strandat 81.529 kb on - strandat 81.529 kb on - strandat 81.580 kb on + strandat 81.581 kb on - strandat 81.612 kb on - strandat 81.626 kb on - strandat 81.626 kb on - strandat 81.640 kb on + strandat 81.640 kb on + strandat 81.640 kb on + strandat 81.641 kb on - strandat 81.641 kb on - strandat 81.641 kb on - strandat 81.641 kb on - strandat 81.641 kb on - strandat 81.641 kb on - strandat 81.709 kb on - strandat 81.709 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
79,379 + OHPLBJKB_04431 0.18 -1.9
79,380 - OHPLBJKB_04431 0.18 -2.3
79,595 + OHPLBJKB_04431 0.49 -0.0
79,595 + OHPLBJKB_04431 0.49 -0.9
79,595 + OHPLBJKB_04431 0.49 -0.2
79,595 + OHPLBJKB_04431 0.49 -0.6
79,595 + OHPLBJKB_04431 0.49 -0.6
79,596 - OHPLBJKB_04431 0.49 +0.7
79,596 - OHPLBJKB_04431 0.49 -0.5
79,596 - OHPLBJKB_04431 0.49 -2.4
79,596 - OHPLBJKB_04431 0.49 -0.0
79,622 + OHPLBJKB_04431 0.53 +2.0
79,622 + OHPLBJKB_04431 0.53 -0.9
79,622 + OHPLBJKB_04431 0.53 -2.1
79,622 + OHPLBJKB_04431 0.53 +0.7
79,622 + OHPLBJKB_04431 0.53 -0.3
79,622 + OHPLBJKB_04431 0.53 +1.1
79,640 + OHPLBJKB_04431 0.56 -1.3
79,640 + OHPLBJKB_04431 0.56 -0.9
79,640 + OHPLBJKB_04431 0.56 +0.1
79,651 - OHPLBJKB_04431 0.57 -1.1
79,728 - OHPLBJKB_04431 0.69 +0.4
79,767 - OHPLBJKB_04431 0.74 -0.1
79,767 - OHPLBJKB_04431 0.74 +0.4
79,776 + OHPLBJKB_04431 0.76 +1.1
79,822 - OHPLBJKB_04431 0.82 +1.0
79,854 - OHPLBJKB_04431 0.87 +0.1
79,929 + -0.0
79,941 + -0.6
79,941 + -0.1
79,941 + -0.3
79,942 - -1.3
80,142 + -0.0
80,256 - -1.5
80,323 + +0.7
80,323 + -0.9
80,323 + -0.6
80,323 + +0.1
80,324 - +0.7
80,324 - +0.4
80,457 + OHPLBJKB_04432 0.30 -2.9
80,458 - OHPLBJKB_04432 0.30 -0.5
80,531 + OHPLBJKB_04432 0.47 -0.7
80,531 + OHPLBJKB_04432 0.47 -1.3
80,532 - OHPLBJKB_04432 0.47 +0.0
80,534 + OHPLBJKB_04432 0.47 -0.3
80,534 + OHPLBJKB_04432 0.47 +0.7
80,625 + OHPLBJKB_04432 0.68 -0.7
80,650 - OHPLBJKB_04432 0.74 -1.6
80,659 + OHPLBJKB_04432 0.76 -0.6
80,812 + OHPLBJKB_04433 0.13 +1.3
80,812 + OHPLBJKB_04433 0.13 +0.4
80,813 - OHPLBJKB_04433 0.13 +0.2
80,978 - OHPLBJKB_04433 0.46 +0.7
80,978 - OHPLBJKB_04433 0.46 -1.6
80,978 - OHPLBJKB_04433 0.46 -2.6
80,978 - OHPLBJKB_04433 0.46 -0.8
81,133 - OHPLBJKB_04433 0.76 -1.3
81,224 + -0.5
81,224 + -0.7
81,228 + -1.5
81,228 + -0.0
81,317 + +0.4
81,458 + -0.9
81,458 + +1.7
81,471 + +2.7
81,471 + +1.3
81,471 + -0.1
81,496 - -0.0
81,528 + -0.6
81,528 + +1.3
81,529 - -0.3
81,529 - +1.3
81,529 - +0.0
81,529 - -0.5
81,529 - -1.9
81,529 - -1.6
81,580 + -1.4
81,581 - +1.3
81,612 - +0.3
81,626 - +1.0
81,626 - +1.1
81,640 + -2.0
81,640 + +0.0
81,640 + +0.9
81,641 - +0.1
81,641 - -0.3
81,641 - -1.0
81,641 - +0.5
81,641 - -0.1
81,641 - -0.3
81,709 - -0.9
81,709 - -0.3

Or see this region's nucleotide sequence