Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01392

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01390 and OHPLBJKB_01391 overlap by 11 nucleotidesOHPLBJKB_01391 and OHPLBJKB_01392 are separated by 258 nucleotidesOHPLBJKB_01392 and OHPLBJKB_01393 are separated by 36 nucleotides OHPLBJKB_01390: OHPLBJKB_01390 - Dihydrofolate synthase/folylpolyglutamate synthase, at 1,436,113 to 1,437,381 _01390 OHPLBJKB_01391: OHPLBJKB_01391 - Cell division protein DedD, at 1,437,371 to 1,438,033 _01391 OHPLBJKB_01392: OHPLBJKB_01392 - Colicin V production protein, at 1,438,292 to 1,438,780 _01392 OHPLBJKB_01393: OHPLBJKB_01393 - Amidophosphoribosyltransferase, at 1,438,817 to 1,440,334 _01393 Position (kb) 1438 1439Strain fitness (log2 ratio) -2 -1 0 1at 1437.379 kb on + strandat 1437.532 kb on + strand, within OHPLBJKB_01391at 1437.794 kb on - strand, within OHPLBJKB_01391at 1437.800 kb on + strand, within OHPLBJKB_01391at 1437.800 kb on + strand, within OHPLBJKB_01391at 1437.801 kb on - strand, within OHPLBJKB_01391at 1437.801 kb on - strand, within OHPLBJKB_01391at 1437.801 kb on - strand, within OHPLBJKB_01391at 1437.801 kb on - strand, within OHPLBJKB_01391at 1437.801 kb on - strand, within OHPLBJKB_01391at 1437.801 kb on - strand, within OHPLBJKB_01391at 1437.884 kb on + strand, within OHPLBJKB_01391at 1437.886 kb on + strand, within OHPLBJKB_01391at 1437.887 kb on - strand, within OHPLBJKB_01391at 1437.887 kb on - strand, within OHPLBJKB_01391at 1437.887 kb on - strand, within OHPLBJKB_01391at 1437.887 kb on - strand, within OHPLBJKB_01391at 1437.999 kb on + strandat 1438.000 kb on - strandat 1438.000 kb on - strandat 1438.000 kb on - strandat 1438.019 kb on + strandat 1438.067 kb on + strandat 1438.076 kb on + strandat 1438.112 kb on + strandat 1438.244 kb on - strandat 1438.244 kb on - strandat 1438.244 kb on - strandat 1438.291 kb on + strandat 1438.291 kb on + strandat 1438.292 kb on - strandat 1438.292 kb on - strandat 1438.292 kb on - strandat 1438.292 kb on - strandat 1438.292 kb on - strandat 1438.424 kb on + strand, within OHPLBJKB_01392at 1438.425 kb on - strand, within OHPLBJKB_01392at 1438.425 kb on - strand, within OHPLBJKB_01392at 1438.425 kb on - strand, within OHPLBJKB_01392at 1438.425 kb on - strand, within OHPLBJKB_01392at 1438.425 kb on - strand, within OHPLBJKB_01392at 1438.430 kb on + strand, within OHPLBJKB_01392at 1438.430 kb on + strand, within OHPLBJKB_01392at 1438.430 kb on + strand, within OHPLBJKB_01392at 1438.431 kb on - strand, within OHPLBJKB_01392at 1438.431 kb on - strand, within OHPLBJKB_01392at 1438.542 kb on + strand, within OHPLBJKB_01392at 1438.542 kb on + strand, within OHPLBJKB_01392at 1438.721 kb on - strand, within OHPLBJKB_01392at 1438.743 kb on - strandat 1438.778 kb on + strandat 1438.779 kb on - strandat 1438.779 kb on - strandat 1438.816 kb on + strandat 1438.816 kb on + strandat 1438.817 kb on - strandat 1438.825 kb on + strandat 1438.847 kb on - strandat 1438.847 kb on - strandat 1438.868 kb on + strandat 1438.869 kb on - strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.926 kb on + strandat 1438.927 kb on - strandat 1438.927 kb on - strandat 1438.927 kb on - strandat 1438.927 kb on - strandat 1438.927 kb on - strandat 1438.927 kb on - strandat 1438.936 kb on + strandat 1438.937 kb on - strandat 1438.980 kb on + strand, within OHPLBJKB_01393at 1439.017 kb on + strand, within OHPLBJKB_01393at 1439.084 kb on + strand, within OHPLBJKB_01393at 1439.085 kb on - strand, within OHPLBJKB_01393at 1439.090 kb on - strand, within OHPLBJKB_01393at 1439.090 kb on - strand, within OHPLBJKB_01393at 1439.107 kb on + strand, within OHPLBJKB_01393at 1439.216 kb on - strand, within OHPLBJKB_01393at 1439.218 kb on + strand, within OHPLBJKB_01393at 1439.218 kb on + strand, within OHPLBJKB_01393at 1439.219 kb on - strand, within OHPLBJKB_01393at 1439.272 kb on + strand, within OHPLBJKB_01393at 1439.318 kb on + strand, within OHPLBJKB_01393at 1439.318 kb on + strand, within OHPLBJKB_01393at 1439.350 kb on + strand, within OHPLBJKB_01393at 1439.351 kb on - strand, within OHPLBJKB_01393at 1439.407 kb on + strand, within OHPLBJKB_01393at 1439.407 kb on + strand, within OHPLBJKB_01393at 1439.429 kb on + strand, within OHPLBJKB_01393at 1439.429 kb on + strand, within OHPLBJKB_01393at 1439.429 kb on + strand, within OHPLBJKB_01393at 1439.429 kb on + strand, within OHPLBJKB_01393at 1439.429 kb on + strand, within OHPLBJKB_01393at 1439.430 kb on - strand, within OHPLBJKB_01393at 1439.430 kb on - strand, within OHPLBJKB_01393at 1439.430 kb on - strand, within OHPLBJKB_01393at 1439.431 kb on + strand, within OHPLBJKB_01393at 1439.431 kb on + strand, within OHPLBJKB_01393at 1439.431 kb on + strand, within OHPLBJKB_01393at 1439.431 kb on + strand, within OHPLBJKB_01393at 1439.432 kb on - strand, within OHPLBJKB_01393at 1439.432 kb on - strand, within OHPLBJKB_01393at 1439.432 kb on - strand, within OHPLBJKB_01393at 1439.585 kb on + strand, within OHPLBJKB_01393at 1439.585 kb on + strand, within OHPLBJKB_01393at 1439.586 kb on - strand, within OHPLBJKB_01393at 1439.586 kb on - strand, within OHPLBJKB_01393at 1439.589 kb on + strand, within OHPLBJKB_01393at 1439.589 kb on + strand, within OHPLBJKB_01393at 1439.589 kb on + strand, within OHPLBJKB_01393at 1439.589 kb on + strand, within OHPLBJKB_01393at 1439.589 kb on + strand, within OHPLBJKB_01393at 1439.590 kb on - strand, within OHPLBJKB_01393at 1439.590 kb on - strand, within OHPLBJKB_01393at 1439.590 kb on - strand, within OHPLBJKB_01393at 1439.590 kb on - strand, within OHPLBJKB_01393at 1439.591 kb on + strand, within OHPLBJKB_01393at 1439.591 kb on + strand, within OHPLBJKB_01393at 1439.591 kb on + strand, within OHPLBJKB_01393at 1439.592 kb on - strand, within OHPLBJKB_01393at 1439.592 kb on - strand, within OHPLBJKB_01393at 1439.592 kb on - strand, within OHPLBJKB_01393at 1439.762 kb on - strand, within OHPLBJKB_01393at 1439.762 kb on - strand, within OHPLBJKB_01393

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,437,379 + +0.6
1,437,532 + OHPLBJKB_01391 0.24 -0.5
1,437,794 - OHPLBJKB_01391 0.64 -0.0
1,437,800 + OHPLBJKB_01391 0.65 +1.1
1,437,800 + OHPLBJKB_01391 0.65 -0.6
1,437,801 - OHPLBJKB_01391 0.65 -0.5
1,437,801 - OHPLBJKB_01391 0.65 +1.4
1,437,801 - OHPLBJKB_01391 0.65 +0.5
1,437,801 - OHPLBJKB_01391 0.65 +1.0
1,437,801 - OHPLBJKB_01391 0.65 +0.5
1,437,801 - OHPLBJKB_01391 0.65 +0.5
1,437,884 + OHPLBJKB_01391 0.77 +0.1
1,437,886 + OHPLBJKB_01391 0.78 -0.5
1,437,887 - OHPLBJKB_01391 0.78 -0.2
1,437,887 - OHPLBJKB_01391 0.78 -0.2
1,437,887 - OHPLBJKB_01391 0.78 -0.8
1,437,887 - OHPLBJKB_01391 0.78 -0.6
1,437,999 + +0.4
1,438,000 - -0.4
1,438,000 - -0.0
1,438,000 - +0.4
1,438,019 + -0.1
1,438,067 + +1.1
1,438,076 + +0.3
1,438,112 + -0.6
1,438,244 - -1.0
1,438,244 - +0.2
1,438,244 - +0.5
1,438,291 + +0.6
1,438,291 + -0.4
1,438,292 - -0.4
1,438,292 - -1.1
1,438,292 - -0.6
1,438,292 - -0.8
1,438,292 - -0.8
1,438,424 + OHPLBJKB_01392 0.27 +0.1
1,438,425 - OHPLBJKB_01392 0.27 -1.9
1,438,425 - OHPLBJKB_01392 0.27 -1.1
1,438,425 - OHPLBJKB_01392 0.27 +0.6
1,438,425 - OHPLBJKB_01392 0.27 +0.1
1,438,425 - OHPLBJKB_01392 0.27 +1.3
1,438,430 + OHPLBJKB_01392 0.28 +0.2
1,438,430 + OHPLBJKB_01392 0.28 -0.2
1,438,430 + OHPLBJKB_01392 0.28 -0.4
1,438,431 - OHPLBJKB_01392 0.28 -1.4
1,438,431 - OHPLBJKB_01392 0.28 -0.2
1,438,542 + OHPLBJKB_01392 0.51 +0.2
1,438,542 + OHPLBJKB_01392 0.51 +0.2
1,438,721 - OHPLBJKB_01392 0.88 -1.7
1,438,743 - -1.3
1,438,778 + +0.2
1,438,779 - -0.2
1,438,779 - -0.5
1,438,816 + -0.9
1,438,816 + +0.7
1,438,817 - -0.9
1,438,825 + +0.1
1,438,847 - -0.5
1,438,847 - +0.2
1,438,868 + -1.0
1,438,869 - -0.4
1,438,926 + +0.5
1,438,926 + -0.2
1,438,926 + -1.6
1,438,926 + -1.5
1,438,926 + -1.2
1,438,926 + -0.5
1,438,926 + -0.3
1,438,926 + -1.3
1,438,927 - -0.3
1,438,927 - -1.0
1,438,927 - -0.4
1,438,927 - -0.1
1,438,927 - -0.1
1,438,927 - -0.0
1,438,936 + +0.3
1,438,937 - -0.9
1,438,980 + OHPLBJKB_01393 0.11 +0.2
1,439,017 + OHPLBJKB_01393 0.13 -1.2
1,439,084 + OHPLBJKB_01393 0.18 -0.3
1,439,085 - OHPLBJKB_01393 0.18 +1.0
1,439,090 - OHPLBJKB_01393 0.18 -0.3
1,439,090 - OHPLBJKB_01393 0.18 -1.5
1,439,107 + OHPLBJKB_01393 0.19 -1.3
1,439,216 - OHPLBJKB_01393 0.26 +1.1
1,439,218 + OHPLBJKB_01393 0.26 +0.3
1,439,218 + OHPLBJKB_01393 0.26 -0.4
1,439,219 - OHPLBJKB_01393 0.26 -1.3
1,439,272 + OHPLBJKB_01393 0.30 +0.2
1,439,318 + OHPLBJKB_01393 0.33 -0.1
1,439,318 + OHPLBJKB_01393 0.33 -1.4
1,439,350 + OHPLBJKB_01393 0.35 +0.5
1,439,351 - OHPLBJKB_01393 0.35 -0.2
1,439,407 + OHPLBJKB_01393 0.39 -2.0
1,439,407 + OHPLBJKB_01393 0.39 -0.3
1,439,429 + OHPLBJKB_01393 0.40 +0.1
1,439,429 + OHPLBJKB_01393 0.40 +1.4
1,439,429 + OHPLBJKB_01393 0.40 -1.7
1,439,429 + OHPLBJKB_01393 0.40 -0.5
1,439,429 + OHPLBJKB_01393 0.40 +0.8
1,439,430 - OHPLBJKB_01393 0.40 +0.6
1,439,430 - OHPLBJKB_01393 0.40 -0.6
1,439,430 - OHPLBJKB_01393 0.40 -2.3
1,439,431 + OHPLBJKB_01393 0.40 -0.6
1,439,431 + OHPLBJKB_01393 0.40 -0.1
1,439,431 + OHPLBJKB_01393 0.40 +0.5
1,439,431 + OHPLBJKB_01393 0.40 -1.8
1,439,432 - OHPLBJKB_01393 0.41 -0.1
1,439,432 - OHPLBJKB_01393 0.41 -0.7
1,439,432 - OHPLBJKB_01393 0.41 -1.0
1,439,585 + OHPLBJKB_01393 0.51 +0.2
1,439,585 + OHPLBJKB_01393 0.51 -1.1
1,439,586 - OHPLBJKB_01393 0.51 +0.1
1,439,586 - OHPLBJKB_01393 0.51 +1.3
1,439,589 + OHPLBJKB_01393 0.51 +0.0
1,439,589 + OHPLBJKB_01393 0.51 -1.1
1,439,589 + OHPLBJKB_01393 0.51 +0.5
1,439,589 + OHPLBJKB_01393 0.51 +0.8
1,439,589 + OHPLBJKB_01393 0.51 -0.3
1,439,590 - OHPLBJKB_01393 0.51 -0.0
1,439,590 - OHPLBJKB_01393 0.51 -0.3
1,439,590 - OHPLBJKB_01393 0.51 -1.9
1,439,590 - OHPLBJKB_01393 0.51 +0.5
1,439,591 + OHPLBJKB_01393 0.51 -1.3
1,439,591 + OHPLBJKB_01393 0.51 -0.5
1,439,591 + OHPLBJKB_01393 0.51 +0.8
1,439,592 - OHPLBJKB_01393 0.51 -0.5
1,439,592 - OHPLBJKB_01393 0.51 -0.0
1,439,592 - OHPLBJKB_01393 0.51 -0.1
1,439,762 - OHPLBJKB_01393 0.62 -1.0
1,439,762 - OHPLBJKB_01393 0.62 -0.6

Or see this region's nucleotide sequence