Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03210 and ABI39_RS03215 are separated by 558 nucleotides ABI39_RS03215 and ABI39_RS03220 are separated by 54 nucleotides ABI39_RS03220 and ABI39_RS03225 overlap by 4 nucleotides
ABI39_RS03210: ABI39_RS03210 - helix-turn-helix domain-containing protein, at 932,551 to 933,456
_RS03210
ABI39_RS03215: ABI39_RS03215 - outer membrane beta-barrel protein, at 934,015 to 936,582
_RS03215
ABI39_RS03220: ABI39_RS03220 - RNA polymerase sigma-70 factor, at 936,637 to 937,164
_RS03220
ABI39_RS03225: ABI39_RS03225 - FecR domain-containing protein, at 937,161 to 938,171
_RS03225
Position (kb) 934
935
936
937 Strain fitness (log2 ratio) -1
0
1 at 933.017 kb on - strand, within ABI39_RS03210 at 933.106 kb on - strand, within ABI39_RS03210 at 933.106 kb on - strand, within ABI39_RS03210 at 933.113 kb on - strand, within ABI39_RS03210 at 933.212 kb on - strand, within ABI39_RS03210 at 933.243 kb on + strand, within ABI39_RS03210 at 933.243 kb on + strand, within ABI39_RS03210 at 933.244 kb on - strand, within ABI39_RS03210 at 933.250 kb on - strand, within ABI39_RS03210 at 933.469 kb on + strand at 933.490 kb on + strand at 933.849 kb on - strand at 933.949 kb on - strand at 933.982 kb on - strand at 934.112 kb on + strand at 934.113 kb on - strand at 934.118 kb on + strand at 934.146 kb on + strand at 934.146 kb on + strand at 934.180 kb on - strand at 934.362 kb on - strand, within ABI39_RS03215 at 934.401 kb on - strand, within ABI39_RS03215 at 934.406 kb on + strand, within ABI39_RS03215 at 934.514 kb on - strand, within ABI39_RS03215 at 934.517 kb on + strand, within ABI39_RS03215 at 934.552 kb on - strand, within ABI39_RS03215 at 934.625 kb on + strand, within ABI39_RS03215 at 934.778 kb on + strand, within ABI39_RS03215 at 934.782 kb on + strand, within ABI39_RS03215 at 934.991 kb on - strand, within ABI39_RS03215 at 935.000 kb on + strand, within ABI39_RS03215 at 935.140 kb on - strand, within ABI39_RS03215 at 935.212 kb on + strand, within ABI39_RS03215 at 935.580 kb on + strand, within ABI39_RS03215 at 935.745 kb on - strand, within ABI39_RS03215 at 935.765 kb on - strand, within ABI39_RS03215 at 935.773 kb on - strand, within ABI39_RS03215 at 935.773 kb on - strand, within ABI39_RS03215 at 935.776 kb on - strand, within ABI39_RS03215 at 935.860 kb on - strand, within ABI39_RS03215 at 935.896 kb on + strand, within ABI39_RS03215 at 936.014 kb on - strand, within ABI39_RS03215 at 936.014 kb on - strand, within ABI39_RS03215 at 936.045 kb on + strand, within ABI39_RS03215 at 936.046 kb on - strand, within ABI39_RS03215 at 936.108 kb on + strand, within ABI39_RS03215 at 936.282 kb on - strand, within ABI39_RS03215 at 936.390 kb on - strand at 936.441 kb on - strand at 936.450 kb on - strand at 936.458 kb on - strand at 936.987 kb on - strand, within ABI39_RS03220 at 937.106 kb on + strand, within ABI39_RS03220 at 937.107 kb on - strand, within ABI39_RS03220 at 937.436 kb on - strand, within ABI39_RS03225 at 937.582 kb on + strand, within ABI39_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 933,017 - ABI39_RS03210 0.51 +0.4 933,106 - ABI39_RS03210 0.61 +0.1 933,106 - ABI39_RS03210 0.61 +1.0 933,113 - ABI39_RS03210 0.62 +0.5 933,212 - ABI39_RS03210 0.73 +0.1 933,243 + ABI39_RS03210 0.76 -0.1 933,243 + ABI39_RS03210 0.76 +0.1 933,244 - ABI39_RS03210 0.76 -0.1 933,250 - ABI39_RS03210 0.77 +0.4 933,469 + +0.4 933,490 + +0.1 933,849 - -0.3 933,949 - -0.6 933,982 - -0.8 934,112 + +0.4 934,113 - +0.0 934,118 + -0.3 934,146 + -0.0 934,146 + +0.5 934,180 - -0.3 934,362 - ABI39_RS03215 0.14 +0.8 934,401 - ABI39_RS03215 0.15 +0.6 934,406 + ABI39_RS03215 0.15 -0.1 934,514 - ABI39_RS03215 0.19 +0.3 934,517 + ABI39_RS03215 0.20 +0.2 934,552 - ABI39_RS03215 0.21 +0.3 934,625 + ABI39_RS03215 0.24 +0.2 934,778 + ABI39_RS03215 0.30 +0.2 934,782 + ABI39_RS03215 0.30 -0.6 934,991 - ABI39_RS03215 0.38 -0.1 935,000 + ABI39_RS03215 0.38 +0.1 935,140 - ABI39_RS03215 0.44 -0.7 935,212 + ABI39_RS03215 0.47 +0.3 935,580 + ABI39_RS03215 0.61 -0.1 935,745 - ABI39_RS03215 0.67 -0.2 935,765 - ABI39_RS03215 0.68 -0.1 935,773 - ABI39_RS03215 0.68 +0.2 935,773 - ABI39_RS03215 0.68 -0.5 935,776 - ABI39_RS03215 0.69 -0.4 935,860 - ABI39_RS03215 0.72 -0.0 935,896 + ABI39_RS03215 0.73 -0.5 936,014 - ABI39_RS03215 0.78 -0.6 936,014 - ABI39_RS03215 0.78 +0.7 936,045 + ABI39_RS03215 0.79 -0.2 936,046 - ABI39_RS03215 0.79 -0.2 936,108 + ABI39_RS03215 0.82 +0.3 936,282 - ABI39_RS03215 0.88 +0.2 936,390 - -0.2 936,441 - +0.1 936,450 - +0.2 936,458 - -0.0 936,987 - ABI39_RS03220 0.66 -0.2 937,106 + ABI39_RS03220 0.89 +0.5 937,107 - ABI39_RS03220 0.89 -0.2 937,436 - ABI39_RS03225 0.27 -0.0 937,582 + ABI39_RS03225 0.42 +0.1
Or see this region's nucleotide sequence