Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02455

Experiment: lib only

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_02453 and OHPLBJKB_02454 are separated by 159 nucleotidesOHPLBJKB_02454 and OHPLBJKB_02455 are separated by 384 nucleotidesOHPLBJKB_02455 and OHPLBJKB_02456 are separated by 361 nucleotides OHPLBJKB_02453: OHPLBJKB_02453 - Formyltetrahydrofolate deformylase, at 2,565,762 to 2,566,604 _02453 OHPLBJKB_02454: OHPLBJKB_02454 - tRNA-Tyr, at 2,566,764 to 2,566,848 _02454 OHPLBJKB_02455: OHPLBJKB_02455 - tRNA-Tyr, at 2,567,233 to 2,567,317 _02455 OHPLBJKB_02456: OHPLBJKB_02456 - Respiratory nitrate reductase 1 gamma chain, at 2,567,679 to 2,568,356 _02456 Position (kb) 2567 2568Strain fitness (log2 ratio) -2 -1 0 1 2at 2566.236 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.266 kb on + strand, within OHPLBJKB_02453at 2566.267 kb on - strand, within OHPLBJKB_02453at 2566.267 kb on - strand, within OHPLBJKB_02453at 2566.267 kb on - strand, within OHPLBJKB_02453at 2566.269 kb on - strand, within OHPLBJKB_02453at 2566.269 kb on - strand, within OHPLBJKB_02453at 2566.269 kb on - strand, within OHPLBJKB_02453at 2566.322 kb on + strand, within OHPLBJKB_02453at 2566.322 kb on + strand, within OHPLBJKB_02453at 2566.323 kb on - strand, within OHPLBJKB_02453at 2566.377 kb on + strand, within OHPLBJKB_02453at 2566.377 kb on + strand, within OHPLBJKB_02453at 2566.378 kb on - strand, within OHPLBJKB_02453at 2566.416 kb on + strand, within OHPLBJKB_02453at 2566.416 kb on + strand, within OHPLBJKB_02453at 2566.417 kb on - strand, within OHPLBJKB_02453at 2566.417 kb on - strand, within OHPLBJKB_02453at 2566.417 kb on - strand, within OHPLBJKB_02453at 2566.478 kb on + strand, within OHPLBJKB_02453at 2566.479 kb on - strand, within OHPLBJKB_02453at 2566.482 kb on + strand, within OHPLBJKB_02453at 2566.482 kb on + strand, within OHPLBJKB_02453at 2566.482 kb on + strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.483 kb on - strand, within OHPLBJKB_02453at 2566.497 kb on - strand, within OHPLBJKB_02453at 2566.497 kb on - strand, within OHPLBJKB_02453at 2566.534 kb on + strandat 2566.535 kb on - strandat 2566.546 kb on + strandat 2566.548 kb on + strandat 2566.548 kb on + strandat 2566.549 kb on - strandat 2566.556 kb on - strandat 2566.653 kb on + strandat 2566.849 kb on + strandat 2566.849 kb on + strandat 2567.359 kb on + strandat 2567.359 kb on + strandat 2567.359 kb on + strandat 2567.509 kb on + strandat 2567.567 kb on + strandat 2567.567 kb on + strandat 2567.568 kb on - strandat 2567.584 kb on + strandat 2567.660 kb on + strandat 2567.660 kb on + strandat 2567.704 kb on + strandat 2567.704 kb on + strandat 2567.704 kb on + strandat 2567.708 kb on + strandat 2567.708 kb on + strandat 2567.708 kb on + strandat 2567.708 kb on + strandat 2567.708 kb on + strandat 2567.709 kb on - strandat 2567.709 kb on - strandat 2567.709 kb on - strandat 2568.128 kb on - strand, within OHPLBJKB_02456at 2568.149 kb on + strand, within OHPLBJKB_02456at 2568.183 kb on - strand, within OHPLBJKB_02456at 2568.287 kb on + strand, within OHPLBJKB_02456at 2568.312 kb on + strandat 2568.316 kb on + strandat 2568.316 kb on + strandat 2568.317 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction lib only
remove
2,566,236 + OHPLBJKB_02453 0.56 -0.5
2,566,266 + OHPLBJKB_02453 0.60 +0.3
2,566,266 + OHPLBJKB_02453 0.60 +0.5
2,566,266 + OHPLBJKB_02453 0.60 -0.1
2,566,266 + OHPLBJKB_02453 0.60 -0.7
2,566,267 - OHPLBJKB_02453 0.60 -1.2
2,566,267 - OHPLBJKB_02453 0.60 +0.5
2,566,267 - OHPLBJKB_02453 0.60 -1.0
2,566,269 - OHPLBJKB_02453 0.60 -0.1
2,566,269 - OHPLBJKB_02453 0.60 -1.0
2,566,269 - OHPLBJKB_02453 0.60 +0.1
2,566,322 + OHPLBJKB_02453 0.66 +0.3
2,566,322 + OHPLBJKB_02453 0.66 -1.4
2,566,323 - OHPLBJKB_02453 0.67 -0.0
2,566,377 + OHPLBJKB_02453 0.73 -0.2
2,566,377 + OHPLBJKB_02453 0.73 -0.1
2,566,378 - OHPLBJKB_02453 0.73 -0.3
2,566,416 + OHPLBJKB_02453 0.78 +1.2
2,566,416 + OHPLBJKB_02453 0.78 -0.3
2,566,417 - OHPLBJKB_02453 0.78 +0.9
2,566,417 - OHPLBJKB_02453 0.78 -0.3
2,566,417 - OHPLBJKB_02453 0.78 -0.1
2,566,478 + OHPLBJKB_02453 0.85 -1.0
2,566,479 - OHPLBJKB_02453 0.85 -0.0
2,566,482 + OHPLBJKB_02453 0.85 +0.8
2,566,482 + OHPLBJKB_02453 0.85 +1.4
2,566,482 + OHPLBJKB_02453 0.85 +0.2
2,566,483 - OHPLBJKB_02453 0.86 +1.1
2,566,483 - OHPLBJKB_02453 0.86 -0.6
2,566,483 - OHPLBJKB_02453 0.86 +0.5
2,566,483 - OHPLBJKB_02453 0.86 +0.5
2,566,483 - OHPLBJKB_02453 0.86 +0.2
2,566,483 - OHPLBJKB_02453 0.86 -1.0
2,566,497 - OHPLBJKB_02453 0.87 +1.8
2,566,497 - OHPLBJKB_02453 0.87 +0.5
2,566,534 + -0.4
2,566,535 - +0.7
2,566,546 + +0.5
2,566,548 + +0.0
2,566,548 + -0.2
2,566,549 - +1.0
2,566,556 - +0.2
2,566,653 + +0.3
2,566,849 + -0.3
2,566,849 + -0.7
2,567,359 + +0.3
2,567,359 + +1.4
2,567,359 + -0.4
2,567,509 + +0.2
2,567,567 + +0.7
2,567,567 + -1.0
2,567,568 - +0.3
2,567,584 + -1.1
2,567,660 + +0.2
2,567,660 + +1.1
2,567,704 + +0.4
2,567,704 + +0.2
2,567,704 + +0.2
2,567,708 + +0.8
2,567,708 + -1.5
2,567,708 + +0.0
2,567,708 + +0.3
2,567,708 + -1.2
2,567,709 - -0.3
2,567,709 - +0.5
2,567,709 - +0.2
2,568,128 - OHPLBJKB_02456 0.66 +0.3
2,568,149 + OHPLBJKB_02456 0.69 -2.4
2,568,183 - OHPLBJKB_02456 0.74 -0.3
2,568,287 + OHPLBJKB_02456 0.90 -0.5
2,568,312 + +0.3
2,568,316 + -0.0
2,568,316 + -0.1
2,568,317 - +0.8

Or see this region's nucleotide sequence