Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02981

Experiment: T7 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02980 and OHPLBJKB_02981 are separated by 15 nucleotidesOHPLBJKB_02981 and OHPLBJKB_02982 are separated by 846 nucleotides OHPLBJKB_02980: OHPLBJKB_02980 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 3,101,604 to 3,102,743 _02980 OHPLBJKB_02981: OHPLBJKB_02981 - Cytochrome bd-I ubiquinol oxidase subunit 1, at 3,102,759 to 3,104,327 _02981 OHPLBJKB_02982: OHPLBJKB_02982 - Mannosylglycerate hydrolase, at 3,105,174 to 3,107,453 _02982 Position (kb) 3102 3103 3104 3105Strain fitness (log2 ratio) -2 -1 0 1at 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.504 kb on - strandat 3104.506 kb on - strandat 3104.508 kb on - strandat 3104.508 kb on - strandat 3104.508 kb on - strandat 3104.508 kb on - strandat 3104.508 kb on - strandat 3104.508 kb on - strandat 3104.508 kb on - strandat 3104.511 kb on - strandat 3104.532 kb on - strandat 3104.584 kb on - strandat 3104.584 kb on - strandat 3104.584 kb on - strandat 3104.587 kb on + strandat 3104.587 kb on + strandat 3104.587 kb on + strandat 3104.588 kb on - strandat 3104.656 kb on + strandat 3104.657 kb on - strandat 3104.657 kb on - strandat 3104.658 kb on + strandat 3104.659 kb on - strandat 3104.666 kb on + strandat 3104.727 kb on + strandat 3104.778 kb on + strandat 3104.778 kb on + strandat 3104.778 kb on + strandat 3104.778 kb on + strandat 3104.846 kb on + strandat 3104.847 kb on - strandat 3104.847 kb on - strandat 3104.867 kb on + strandat 3104.868 kb on - strandat 3104.870 kb on + strandat 3104.871 kb on - strandat 3104.874 kb on - strandat 3104.874 kb on - strandat 3104.881 kb on + strandat 3104.881 kb on + strandat 3104.881 kb on + strandat 3104.882 kb on - strandat 3104.882 kb on - strandat 3104.976 kb on + strandat 3104.977 kb on - strandat 3104.977 kb on - strandat 3104.977 kb on - strandat 3104.978 kb on + strandat 3104.978 kb on + strandat 3104.979 kb on - strandat 3104.979 kb on - strandat 3104.979 kb on - strandat 3104.979 kb on - strandat 3104.979 kb on - strandat 3105.000 kb on - strandat 3105.040 kb on - strandat 3105.040 kb on - strandat 3105.040 kb on - strandat 3105.056 kb on - strandat 3105.088 kb on - strandat 3105.149 kb on + strandat 3105.149 kb on + strandat 3105.150 kb on - strandat 3105.229 kb on - strandat 3105.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T7 MOI1
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3,104,504 - +0.5
3,104,504 - +0.3
3,104,504 - -0.1
3,104,504 - -0.9
3,104,504 - -0.4
3,104,504 - +0.8
3,104,504 - -0.6
3,104,504 - -0.2
3,104,506 - -0.8
3,104,508 - +0.4
3,104,508 - -1.0
3,104,508 - +0.5
3,104,508 - +0.1
3,104,508 - -0.3
3,104,508 - +1.3
3,104,508 - -1.9
3,104,511 - +1.4
3,104,532 - -0.6
3,104,584 - -0.6
3,104,584 - -0.6
3,104,584 - -0.2
3,104,587 + +0.8
3,104,587 + +0.1
3,104,587 + -1.8
3,104,588 - +0.5
3,104,656 + -0.7
3,104,657 - +0.7
3,104,657 - +0.2
3,104,658 + +1.0
3,104,659 - -0.2
3,104,666 + +0.0
3,104,727 + +1.1
3,104,778 + +0.1
3,104,778 + -0.8
3,104,778 + +0.4
3,104,778 + -0.3
3,104,846 + +0.7
3,104,847 - -0.6
3,104,847 - +0.6
3,104,867 + -0.3
3,104,868 - -0.4
3,104,870 + -0.2
3,104,871 - -1.0
3,104,874 - -0.5
3,104,874 - -0.4
3,104,881 + +0.5
3,104,881 + -0.3
3,104,881 + +0.2
3,104,882 - -0.5
3,104,882 - +0.1
3,104,976 + +0.2
3,104,977 - +1.4
3,104,977 - -0.1
3,104,977 - -0.9
3,104,978 + -0.7
3,104,978 + +0.7
3,104,979 - +0.2
3,104,979 - +0.1
3,104,979 - +0.9
3,104,979 - -0.4
3,104,979 - -0.7
3,105,000 - +0.1
3,105,040 - -0.4
3,105,040 - +0.1
3,105,040 - +0.2
3,105,056 - -0.7
3,105,088 - -0.5
3,105,149 + -0.3
3,105,149 + -0.3
3,105,150 - +0.2
3,105,229 - +0.5
3,105,258 - -1.0

Or see this region's nucleotide sequence