Experiment: T7 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02068 and OHPLBJKB_02069 are separated by 234 nucleotides OHPLBJKB_02069 and OHPLBJKB_02070 are separated by 127 nucleotides
OHPLBJKB_02068: OHPLBJKB_02068 - Inner membrane transport protein YdhP, at 2,143,330 to 2,144,499
_02068
OHPLBJKB_02069: OHPLBJKB_02069 - Superoxide dismutase [Fe], at 2,144,734 to 2,145,315
_02069
OHPLBJKB_02070: OHPLBJKB_02070 - Murein DD-endopeptidase MepH, at 2,145,443 to 2,146,258
_02070
Position (kb)
2144
2145
2146 Strain fitness (log2 ratio)
-2
-1
0
1 at 2143.755 kb on + strand, within OHPLBJKB_02068 at 2143.850 kb on + strand, within OHPLBJKB_02068 at 2143.850 kb on + strand, within OHPLBJKB_02068 at 2143.850 kb on + strand, within OHPLBJKB_02068 at 2143.851 kb on - strand, within OHPLBJKB_02068 at 2143.869 kb on - strand, within OHPLBJKB_02068 at 2143.869 kb on - strand, within OHPLBJKB_02068 at 2143.872 kb on + strand, within OHPLBJKB_02068 at 2143.873 kb on - strand, within OHPLBJKB_02068 at 2143.873 kb on - strand, within OHPLBJKB_02068 at 2143.873 kb on - strand, within OHPLBJKB_02068 at 2143.990 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.996 kb on + strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.997 kb on - strand, within OHPLBJKB_02068 at 2143.998 kb on + strand, within OHPLBJKB_02068 at 2143.998 kb on + strand, within OHPLBJKB_02068 at 2143.998 kb on + strand, within OHPLBJKB_02068 at 2143.998 kb on + strand, within OHPLBJKB_02068 at 2143.999 kb on - strand, within OHPLBJKB_02068 at 2143.999 kb on - strand, within OHPLBJKB_02068 at 2144.020 kb on - strand, within OHPLBJKB_02068 at 2144.020 kb on - strand, within OHPLBJKB_02068 at 2144.020 kb on - strand, within OHPLBJKB_02068 at 2144.020 kb on - strand, within OHPLBJKB_02068 at 2144.166 kb on + strand, within OHPLBJKB_02068 at 2144.211 kb on + strand, within OHPLBJKB_02068 at 2144.211 kb on + strand, within OHPLBJKB_02068 at 2144.211 kb on + strand, within OHPLBJKB_02068 at 2144.212 kb on - strand, within OHPLBJKB_02068 at 2144.212 kb on - strand, within OHPLBJKB_02068 at 2144.331 kb on + strand, within OHPLBJKB_02068 at 2144.451 kb on + strand at 2144.451 kb on + strand at 2144.497 kb on + strand at 2144.501 kb on + strand at 2144.521 kb on + strand at 2144.622 kb on + strand at 2144.667 kb on - strand at 2144.736 kb on - strand at 2144.825 kb on + strand, within OHPLBJKB_02069 at 2144.825 kb on + strand, within OHPLBJKB_02069 at 2144.825 kb on + strand, within OHPLBJKB_02069 at 2144.825 kb on + strand, within OHPLBJKB_02069 at 2144.826 kb on - strand, within OHPLBJKB_02069 at 2144.826 kb on - strand, within OHPLBJKB_02069 at 2144.826 kb on - strand, within OHPLBJKB_02069 at 2144.829 kb on - strand, within OHPLBJKB_02069 at 2144.829 kb on - strand, within OHPLBJKB_02069 at 2145.093 kb on + strand, within OHPLBJKB_02069 at 2145.094 kb on - strand, within OHPLBJKB_02069 at 2145.094 kb on - strand, within OHPLBJKB_02069 at 2145.094 kb on - strand, within OHPLBJKB_02069 at 2145.148 kb on - strand, within OHPLBJKB_02069 at 2145.166 kb on - strand, within OHPLBJKB_02069 at 2145.204 kb on + strand, within OHPLBJKB_02069 at 2145.212 kb on + strand, within OHPLBJKB_02069 at 2145.213 kb on - strand, within OHPLBJKB_02069 at 2145.213 kb on - strand, within OHPLBJKB_02069 at 2145.213 kb on - strand, within OHPLBJKB_02069 at 2145.213 kb on - strand, within OHPLBJKB_02069 at 2145.240 kb on - strand, within OHPLBJKB_02069 at 2145.287 kb on + strand at 2145.288 kb on - strand at 2145.288 kb on - strand at 2145.292 kb on + strand at 2145.292 kb on + strand at 2145.344 kb on + strand at 2145.345 kb on - strand at 2145.345 kb on - strand at 2145.348 kb on + strand at 2145.348 kb on + strand at 2145.349 kb on - strand at 2145.349 kb on - strand at 2145.486 kb on + strand at 2145.501 kb on + strand at 2145.576 kb on + strand, within OHPLBJKB_02070 at 2145.577 kb on - strand, within OHPLBJKB_02070 at 2145.577 kb on - strand, within OHPLBJKB_02070 at 2145.577 kb on - strand, within OHPLBJKB_02070 at 2145.614 kb on - strand, within OHPLBJKB_02070 at 2145.649 kb on + strand, within OHPLBJKB_02070 at 2145.681 kb on + strand, within OHPLBJKB_02070 at 2145.681 kb on + strand, within OHPLBJKB_02070 at 2145.682 kb on - strand, within OHPLBJKB_02070 at 2145.682 kb on - strand, within OHPLBJKB_02070 at 2145.682 kb on - strand, within OHPLBJKB_02070 at 2145.682 kb on - strand, within OHPLBJKB_02070 at 2145.729 kb on + strand, within OHPLBJKB_02070 at 2145.729 kb on + strand, within OHPLBJKB_02070 at 2145.735 kb on + strand, within OHPLBJKB_02070 at 2145.738 kb on + strand, within OHPLBJKB_02070 at 2145.925 kb on + strand, within OHPLBJKB_02070 at 2145.926 kb on - strand, within OHPLBJKB_02070 at 2145.935 kb on - strand, within OHPLBJKB_02070 at 2145.967 kb on + strand, within OHPLBJKB_02070 at 2145.967 kb on + strand, within OHPLBJKB_02070 at 2146.004 kb on - strand, within OHPLBJKB_02070 at 2146.063 kb on + strand, within OHPLBJKB_02070 at 2146.141 kb on + strand, within OHPLBJKB_02070 at 2146.141 kb on + strand, within OHPLBJKB_02070 at 2146.142 kb on - strand, within OHPLBJKB_02070 at 2146.142 kb on - strand, within OHPLBJKB_02070 at 2146.142 kb on - strand, within OHPLBJKB_02070 at 2146.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction T7 MOI1 remove 2,143,755 + OHPLBJKB_02068 0.36 +0.1 2,143,850 + OHPLBJKB_02068 0.44 +0.1 2,143,850 + OHPLBJKB_02068 0.44 -0.6 2,143,850 + OHPLBJKB_02068 0.44 +0.5 2,143,851 - OHPLBJKB_02068 0.45 +0.4 2,143,869 - OHPLBJKB_02068 0.46 +1.2 2,143,869 - OHPLBJKB_02068 0.46 -0.6 2,143,872 + OHPLBJKB_02068 0.46 +1.2 2,143,873 - OHPLBJKB_02068 0.46 +0.1 2,143,873 - OHPLBJKB_02068 0.46 -1.5 2,143,873 - OHPLBJKB_02068 0.46 -0.2 2,143,990 + OHPLBJKB_02068 0.56 -0.1 2,143,996 + OHPLBJKB_02068 0.57 -0.1 2,143,996 + OHPLBJKB_02068 0.57 -1.1 2,143,996 + OHPLBJKB_02068 0.57 -0.7 2,143,996 + OHPLBJKB_02068 0.57 +0.1 2,143,996 + OHPLBJKB_02068 0.57 -0.3 2,143,996 + OHPLBJKB_02068 0.57 -1.4 2,143,996 + OHPLBJKB_02068 0.57 -1.0 2,143,996 + OHPLBJKB_02068 0.57 +0.4 2,143,996 + OHPLBJKB_02068 0.57 +0.3 2,143,996 + OHPLBJKB_02068 0.57 +0.4 2,143,996 + OHPLBJKB_02068 0.57 -0.5 2,143,996 + OHPLBJKB_02068 0.57 -0.9 2,143,996 + OHPLBJKB_02068 0.57 -0.4 2,143,996 + OHPLBJKB_02068 0.57 +0.1 2,143,996 + OHPLBJKB_02068 0.57 +0.0 2,143,996 + OHPLBJKB_02068 0.57 -0.5 2,143,997 - OHPLBJKB_02068 0.57 +0.0 2,143,997 - OHPLBJKB_02068 0.57 -1.2 2,143,997 - OHPLBJKB_02068 0.57 -0.7 2,143,997 - OHPLBJKB_02068 0.57 -0.5 2,143,997 - OHPLBJKB_02068 0.57 -0.2 2,143,997 - OHPLBJKB_02068 0.57 +0.6 2,143,997 - OHPLBJKB_02068 0.57 +0.3 2,143,997 - OHPLBJKB_02068 0.57 -0.2 2,143,997 - OHPLBJKB_02068 0.57 -0.6 2,143,997 - OHPLBJKB_02068 0.57 -0.6 2,143,998 + OHPLBJKB_02068 0.57 +0.4 2,143,998 + OHPLBJKB_02068 0.57 -1.2 2,143,998 + OHPLBJKB_02068 0.57 +0.0 2,143,998 + OHPLBJKB_02068 0.57 +0.1 2,143,999 - OHPLBJKB_02068 0.57 -2.0 2,143,999 - OHPLBJKB_02068 0.57 +0.4 2,144,020 - OHPLBJKB_02068 0.59 -1.3 2,144,020 - OHPLBJKB_02068 0.59 +1.0 2,144,020 - OHPLBJKB_02068 0.59 -0.6 2,144,020 - OHPLBJKB_02068 0.59 -1.1 2,144,166 + OHPLBJKB_02068 0.71 +1.6 2,144,211 + OHPLBJKB_02068 0.75 +1.3 2,144,211 + OHPLBJKB_02068 0.75 -2.1 2,144,211 + OHPLBJKB_02068 0.75 -2.7 2,144,212 - OHPLBJKB_02068 0.75 -0.2 2,144,212 - OHPLBJKB_02068 0.75 -0.8 2,144,331 + OHPLBJKB_02068 0.86 +0.2 2,144,451 + -1.2 2,144,451 + -0.8 2,144,497 + -0.8 2,144,501 + -1.1 2,144,521 + +0.3 2,144,622 + +0.1 2,144,667 - -0.9 2,144,736 - +0.6 2,144,825 + OHPLBJKB_02069 0.16 +0.3 2,144,825 + OHPLBJKB_02069 0.16 -1.3 2,144,825 + OHPLBJKB_02069 0.16 +0.9 2,144,825 + OHPLBJKB_02069 0.16 -2.6 2,144,826 - OHPLBJKB_02069 0.16 +0.6 2,144,826 - OHPLBJKB_02069 0.16 +0.9 2,144,826 - OHPLBJKB_02069 0.16 +0.8 2,144,829 - OHPLBJKB_02069 0.16 +0.0 2,144,829 - OHPLBJKB_02069 0.16 +0.2 2,145,093 + OHPLBJKB_02069 0.62 +0.8 2,145,094 - OHPLBJKB_02069 0.62 -0.0 2,145,094 - OHPLBJKB_02069 0.62 +0.5 2,145,094 - OHPLBJKB_02069 0.62 +1.1 2,145,148 - OHPLBJKB_02069 0.71 -0.6 2,145,166 - OHPLBJKB_02069 0.74 +0.4 2,145,204 + OHPLBJKB_02069 0.81 +0.7 2,145,212 + OHPLBJKB_02069 0.82 +0.7 2,145,213 - OHPLBJKB_02069 0.82 -0.1 2,145,213 - OHPLBJKB_02069 0.82 +0.9 2,145,213 - OHPLBJKB_02069 0.82 +0.7 2,145,213 - OHPLBJKB_02069 0.82 -0.1 2,145,240 - OHPLBJKB_02069 0.87 +0.0 2,145,287 + +1.4 2,145,288 - +0.4 2,145,288 - -0.3 2,145,292 + +0.9 2,145,292 + +1.6 2,145,344 + -2.4 2,145,345 - +0.0 2,145,345 - +0.3 2,145,348 + -0.8 2,145,348 + -0.4 2,145,349 - +0.4 2,145,349 - +0.1 2,145,486 + +1.3 2,145,501 + -1.5 2,145,576 + OHPLBJKB_02070 0.16 +0.3 2,145,577 - OHPLBJKB_02070 0.16 -1.0 2,145,577 - OHPLBJKB_02070 0.16 +0.7 2,145,577 - OHPLBJKB_02070 0.16 -0.7 2,145,614 - OHPLBJKB_02070 0.21 +1.4 2,145,649 + OHPLBJKB_02070 0.25 +0.6 2,145,681 + OHPLBJKB_02070 0.29 +0.7 2,145,681 + OHPLBJKB_02070 0.29 +0.5 2,145,682 - OHPLBJKB_02070 0.29 -0.3 2,145,682 - OHPLBJKB_02070 0.29 -0.7 2,145,682 - OHPLBJKB_02070 0.29 -1.4 2,145,682 - OHPLBJKB_02070 0.29 -0.1 2,145,729 + OHPLBJKB_02070 0.35 -0.1 2,145,729 + OHPLBJKB_02070 0.35 +1.4 2,145,735 + OHPLBJKB_02070 0.36 -0.1 2,145,738 + OHPLBJKB_02070 0.36 +0.9 2,145,925 + OHPLBJKB_02070 0.59 +0.5 2,145,926 - OHPLBJKB_02070 0.59 +0.5 2,145,935 - OHPLBJKB_02070 0.60 -1.3 2,145,967 + OHPLBJKB_02070 0.64 +0.1 2,145,967 + OHPLBJKB_02070 0.64 +1.0 2,146,004 - OHPLBJKB_02070 0.69 -0.2 2,146,063 + OHPLBJKB_02070 0.76 -0.5 2,146,141 + OHPLBJKB_02070 0.86 -0.4 2,146,141 + OHPLBJKB_02070 0.86 +0.7 2,146,142 - OHPLBJKB_02070 0.86 +0.6 2,146,142 - OHPLBJKB_02070 0.86 -0.1 2,146,142 - OHPLBJKB_02070 0.86 +0.0 2,146,196 + -0.4
Or see this region's nucleotide sequence