Experiment: Red Arabinan from sugar-beet (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03515 and ABI39_RS03520 overlap by 1 nucleotides ABI39_RS03520 and ABI39_RS03525 are separated by 208 nucleotides ABI39_RS03525 and ABI39_RS03530 are separated by 115 nucleotides
ABI39_RS03515: ABI39_RS03515 - iron-containing alcohol dehydrogenase, at 1,025,396 to 1,026,568
_RS03515
ABI39_RS03520: ABI39_RS03520 - creatininase family protein, at 1,026,568 to 1,027,323
_RS03520
ABI39_RS03525: ABI39_RS03525 - hypothetical protein, at 1,027,532 to 1,027,798
_RS03525
ABI39_RS03530: ABI39_RS03530 - DUF4221 domain-containing protein, at 1,027,914 to 1,029,068
_RS03530
Position (kb) 1026
1027
1028 Strain fitness (log2 ratio) -1
0
1 at 1025.568 kb on + strand, within ABI39_RS03515 at 1025.767 kb on - strand, within ABI39_RS03515 at 1025.935 kb on + strand, within ABI39_RS03515 at 1026.059 kb on + strand, within ABI39_RS03515 at 1026.087 kb on - strand, within ABI39_RS03515 at 1026.093 kb on - strand, within ABI39_RS03515 at 1026.210 kb on + strand, within ABI39_RS03515 at 1026.411 kb on + strand, within ABI39_RS03515 at 1026.484 kb on + strand at 1026.667 kb on - strand, within ABI39_RS03520 at 1026.682 kb on + strand, within ABI39_RS03520 at 1026.776 kb on - strand, within ABI39_RS03520 at 1026.869 kb on + strand, within ABI39_RS03520 at 1026.869 kb on + strand, within ABI39_RS03520 at 1026.869 kb on + strand, within ABI39_RS03520 at 1026.870 kb on - strand, within ABI39_RS03520 at 1026.945 kb on + strand, within ABI39_RS03520 at 1027.084 kb on + strand, within ABI39_RS03520 at 1027.084 kb on + strand, within ABI39_RS03520 at 1027.305 kb on - strand at 1027.308 kb on + strand at 1027.330 kb on + strand at 1027.385 kb on + strand at 1027.386 kb on - strand at 1027.504 kb on + strand at 1027.505 kb on - strand at 1027.505 kb on - strand at 1027.505 kb on - strand at 1027.506 kb on + strand at 1027.531 kb on + strand at 1027.560 kb on + strand, within ABI39_RS03525 at 1027.592 kb on + strand, within ABI39_RS03525 at 1027.593 kb on - strand, within ABI39_RS03525 at 1027.690 kb on + strand, within ABI39_RS03525 at 1027.810 kb on - strand at 1027.833 kb on + strand at 1027.882 kb on + strand at 1027.886 kb on + strand at 1027.886 kb on + strand at 1027.895 kb on + strand at 1027.896 kb on - strand at 1027.897 kb on + strand at 1027.897 kb on + strand at 1027.906 kb on + strand at 1027.931 kb on + strand at 1027.990 kb on - strand at 1028.043 kb on - strand, within ABI39_RS03530 at 1028.064 kb on - strand, within ABI39_RS03530 at 1028.095 kb on - strand, within ABI39_RS03530 at 1028.125 kb on - strand, within ABI39_RS03530 at 1028.126 kb on + strand, within ABI39_RS03530 at 1028.135 kb on + strand, within ABI39_RS03530 at 1028.135 kb on + strand, within ABI39_RS03530 at 1028.214 kb on - strand, within ABI39_RS03530 at 1028.214 kb on - strand, within ABI39_RS03530
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet (C) remove 1,025,568 + ABI39_RS03515 0.15 +0.1 1,025,767 - ABI39_RS03515 0.32 -0.1 1,025,935 + ABI39_RS03515 0.46 +0.4 1,026,059 + ABI39_RS03515 0.57 -0.2 1,026,087 - ABI39_RS03515 0.59 -0.7 1,026,093 - ABI39_RS03515 0.59 +0.0 1,026,210 + ABI39_RS03515 0.69 +0.2 1,026,411 + ABI39_RS03515 0.87 -0.1 1,026,484 + -0.0 1,026,667 - ABI39_RS03520 0.13 +0.5 1,026,682 + ABI39_RS03520 0.15 -0.9 1,026,776 - ABI39_RS03520 0.28 +0.0 1,026,869 + ABI39_RS03520 0.40 -0.1 1,026,869 + ABI39_RS03520 0.40 +0.2 1,026,869 + ABI39_RS03520 0.40 +0.5 1,026,870 - ABI39_RS03520 0.40 +0.4 1,026,945 + ABI39_RS03520 0.50 +0.4 1,027,084 + ABI39_RS03520 0.68 -0.3 1,027,084 + ABI39_RS03520 0.68 +0.3 1,027,305 - -0.2 1,027,308 + +0.3 1,027,330 + +0.2 1,027,385 + +0.3 1,027,386 - -0.4 1,027,504 + +0.2 1,027,505 - +0.1 1,027,505 - +0.1 1,027,505 - +0.0 1,027,506 + -0.2 1,027,531 + -0.5 1,027,560 + ABI39_RS03525 0.10 -0.0 1,027,592 + ABI39_RS03525 0.22 +0.4 1,027,593 - ABI39_RS03525 0.23 -0.4 1,027,690 + ABI39_RS03525 0.59 +0.1 1,027,810 - -0.2 1,027,833 + +0.2 1,027,882 + -1.2 1,027,886 + +0.2 1,027,886 + -0.2 1,027,895 + -0.8 1,027,896 - -0.1 1,027,897 + -0.4 1,027,897 + +0.1 1,027,906 + -0.6 1,027,931 + +0.0 1,027,990 - -0.3 1,028,043 - ABI39_RS03530 0.11 +0.3 1,028,064 - ABI39_RS03530 0.13 +0.1 1,028,095 - ABI39_RS03530 0.16 -0.0 1,028,125 - ABI39_RS03530 0.18 +0.2 1,028,126 + ABI39_RS03530 0.18 +0.6 1,028,135 + ABI39_RS03530 0.19 +0.1 1,028,135 + ABI39_RS03530 0.19 -0.1 1,028,214 - ABI39_RS03530 0.26 +0.1 1,028,214 - ABI39_RS03530 0.26 -0.1
Or see this region's nucleotide sequence