Experiment: T7 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03842 and OHPLBJKB_03843 are separated by 326 nucleotides OHPLBJKB_03843 and OHPLBJKB_03844 are separated by 128 nucleotides OHPLBJKB_03844 and OHPLBJKB_03845 overlap by 1 nucleotides OHPLBJKB_03845 and OHPLBJKB_03846 are separated by 9 nucleotides
OHPLBJKB_03842: OHPLBJKB_03842 - 30S ribosomal protein S6, at 4,035,752 to 4,036,147
_03842
OHPLBJKB_03843: OHPLBJKB_03843 - hypothetical protein, at 4,036,474 to 4,036,749
_03843
OHPLBJKB_03844: OHPLBJKB_03844 - L-ribulose-5-phosphate 4-epimerase UlaF, at 4,036,878 to 4,037,564
_03844
OHPLBJKB_03845: OHPLBJKB_03845 - L-ribulose-5-phosphate 3-epimerase UlaE, at 4,037,564 to 4,038,418
_03845
OHPLBJKB_03846: OHPLBJKB_03846 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 4,038,428 to 4,039,078
_03846
Position (kb)
4036
4037
4038 Strain fitness (log2 ratio)
-2
-1
0
1 at 4036.289 kb on + strand at 4036.317 kb on - strand at 4036.400 kb on + strand at 4036.469 kb on + strand at 4036.469 kb on + strand at 4036.469 kb on + strand at 4036.469 kb on + strand at 4036.470 kb on - strand at 4036.470 kb on - strand at 4036.470 kb on - strand at 4036.470 kb on - strand at 4036.473 kb on + strand at 4036.473 kb on + strand at 4036.473 kb on + strand at 4036.473 kb on + strand at 4036.473 kb on + strand at 4036.473 kb on + strand at 4036.474 kb on - strand at 4036.474 kb on - strand at 4036.474 kb on - strand at 4036.474 kb on - strand at 4036.474 kb on - strand at 4036.474 kb on - strand at 4036.474 kb on - strand at 4036.491 kb on - strand at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.524 kb on + strand, within OHPLBJKB_03843 at 4036.525 kb on - strand, within OHPLBJKB_03843 at 4036.546 kb on - strand, within OHPLBJKB_03843 at 4036.546 kb on - strand, within OHPLBJKB_03843 at 4036.567 kb on - strand, within OHPLBJKB_03843 at 4036.577 kb on + strand, within OHPLBJKB_03843 at 4036.577 kb on + strand, within OHPLBJKB_03843 at 4036.577 kb on + strand, within OHPLBJKB_03843 at 4036.577 kb on + strand, within OHPLBJKB_03843 at 4036.578 kb on - strand, within OHPLBJKB_03843 at 4036.597 kb on + strand, within OHPLBJKB_03843 at 4036.598 kb on - strand, within OHPLBJKB_03843 at 4036.598 kb on - strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.599 kb on + strand, within OHPLBJKB_03843 at 4036.600 kb on - strand, within OHPLBJKB_03843 at 4036.600 kb on - strand, within OHPLBJKB_03843 at 4036.608 kb on + strand, within OHPLBJKB_03843 at 4036.609 kb on - strand, within OHPLBJKB_03843 at 4036.643 kb on + strand, within OHPLBJKB_03843 at 4036.643 kb on + strand, within OHPLBJKB_03843 at 4036.644 kb on - strand, within OHPLBJKB_03843 at 4036.644 kb on - strand, within OHPLBJKB_03843 at 4036.675 kb on + strand, within OHPLBJKB_03843 at 4036.675 kb on + strand, within OHPLBJKB_03843 at 4036.675 kb on + strand, within OHPLBJKB_03843 at 4036.675 kb on + strand, within OHPLBJKB_03843 at 4036.675 kb on + strand, within OHPLBJKB_03843 at 4036.675 kb on + strand, within OHPLBJKB_03843 at 4036.676 kb on - strand, within OHPLBJKB_03843 at 4036.676 kb on - strand, within OHPLBJKB_03843 at 4036.676 kb on - strand, within OHPLBJKB_03843 at 4036.678 kb on + strand, within OHPLBJKB_03843 at 4036.679 kb on - strand, within OHPLBJKB_03843 at 4036.685 kb on + strand, within OHPLBJKB_03843 at 4036.719 kb on + strand, within OHPLBJKB_03843 at 4036.742 kb on - strand at 4036.757 kb on + strand at 4036.758 kb on - strand at 4036.758 kb on - strand at 4036.758 kb on - strand at 4036.758 kb on - strand at 4036.759 kb on + strand at 4036.833 kb on + strand at 4036.842 kb on + strand at 4036.842 kb on + strand at 4036.842 kb on + strand at 4036.842 kb on + strand at 4036.843 kb on - strand at 4036.895 kb on - strand at 4036.901 kb on + strand at 4036.914 kb on - strand at 4036.914 kb on - strand at 4036.914 kb on - strand at 4036.914 kb on - strand at 4036.970 kb on + strand, within OHPLBJKB_03844 at 4036.971 kb on - strand, within OHPLBJKB_03844 at 4037.071 kb on + strand, within OHPLBJKB_03844 at 4037.071 kb on + strand, within OHPLBJKB_03844 at 4037.090 kb on + strand, within OHPLBJKB_03844 at 4037.149 kb on + strand, within OHPLBJKB_03844 at 4037.209 kb on + strand, within OHPLBJKB_03844 at 4037.209 kb on + strand, within OHPLBJKB_03844 at 4037.268 kb on - strand, within OHPLBJKB_03844 at 4037.379 kb on - strand, within OHPLBJKB_03844 at 4037.402 kb on + strand, within OHPLBJKB_03844 at 4037.402 kb on + strand, within OHPLBJKB_03844 at 4037.553 kb on + strand at 4037.689 kb on - strand, within OHPLBJKB_03845 at 4037.789 kb on + strand, within OHPLBJKB_03845 at 4037.789 kb on + strand, within OHPLBJKB_03845 at 4037.790 kb on - strand, within OHPLBJKB_03845 at 4037.801 kb on - strand, within OHPLBJKB_03845 at 4037.801 kb on - strand, within OHPLBJKB_03845 at 4037.899 kb on - strand, within OHPLBJKB_03845 at 4037.899 kb on - strand, within OHPLBJKB_03845 at 4037.899 kb on - strand, within OHPLBJKB_03845 at 4037.899 kb on - strand, within OHPLBJKB_03845 at 4037.899 kb on - strand, within OHPLBJKB_03845 at 4038.054 kb on + strand, within OHPLBJKB_03845 at 4038.055 kb on - strand, within OHPLBJKB_03845 at 4038.055 kb on - strand, within OHPLBJKB_03845 at 4038.064 kb on - strand, within OHPLBJKB_03845 at 4038.064 kb on - strand, within OHPLBJKB_03845 at 4038.388 kb on - strand at 4038.388 kb on - strand at 4038.419 kb on - strand at 4038.419 kb on - strand at 4038.532 kb on + strand, within OHPLBJKB_03846
Per-strain Table
Position Strand Gene LocusTag Fraction T7 MOI10 remove 4,036,289 + +0.0 4,036,317 - -0.0 4,036,400 + -0.0 4,036,469 + -0.1 4,036,469 + -0.1 4,036,469 + -1.8 4,036,469 + -1.1 4,036,470 - -1.2 4,036,470 - +0.3 4,036,470 - -0.2 4,036,470 - -0.9 4,036,473 + +0.8 4,036,473 + +0.9 4,036,473 + +0.1 4,036,473 + +0.2 4,036,473 + +0.4 4,036,473 + +0.5 4,036,474 - -0.5 4,036,474 - +0.5 4,036,474 - +0.1 4,036,474 - -0.3 4,036,474 - -0.8 4,036,474 - +0.3 4,036,474 - -0.2 4,036,491 - +0.3 4,036,524 + OHPLBJKB_03843 0.18 -0.1 4,036,524 + OHPLBJKB_03843 0.18 -0.8 4,036,524 + OHPLBJKB_03843 0.18 -0.1 4,036,524 + OHPLBJKB_03843 0.18 -0.6 4,036,524 + OHPLBJKB_03843 0.18 -0.0 4,036,524 + OHPLBJKB_03843 0.18 +0.5 4,036,524 + OHPLBJKB_03843 0.18 +0.2 4,036,524 + OHPLBJKB_03843 0.18 +0.5 4,036,525 - OHPLBJKB_03843 0.18 -0.5 4,036,546 - OHPLBJKB_03843 0.26 -0.5 4,036,546 - OHPLBJKB_03843 0.26 -0.2 4,036,567 - OHPLBJKB_03843 0.34 -0.4 4,036,577 + OHPLBJKB_03843 0.37 -0.6 4,036,577 + OHPLBJKB_03843 0.37 -0.9 4,036,577 + OHPLBJKB_03843 0.37 -0.5 4,036,577 + OHPLBJKB_03843 0.37 +0.3 4,036,578 - OHPLBJKB_03843 0.38 -1.1 4,036,597 + OHPLBJKB_03843 0.45 -0.8 4,036,598 - OHPLBJKB_03843 0.45 +0.1 4,036,598 - OHPLBJKB_03843 0.45 +0.5 4,036,599 + OHPLBJKB_03843 0.45 +0.0 4,036,599 + OHPLBJKB_03843 0.45 +0.3 4,036,599 + OHPLBJKB_03843 0.45 +0.7 4,036,599 + OHPLBJKB_03843 0.45 -0.1 4,036,599 + OHPLBJKB_03843 0.45 +0.2 4,036,599 + OHPLBJKB_03843 0.45 +1.2 4,036,599 + OHPLBJKB_03843 0.45 +0.2 4,036,600 - OHPLBJKB_03843 0.46 +0.4 4,036,600 - OHPLBJKB_03843 0.46 +0.5 4,036,608 + OHPLBJKB_03843 0.49 +0.5 4,036,609 - OHPLBJKB_03843 0.49 +0.0 4,036,643 + OHPLBJKB_03843 0.61 +0.3 4,036,643 + OHPLBJKB_03843 0.61 -0.6 4,036,644 - OHPLBJKB_03843 0.62 -0.1 4,036,644 - OHPLBJKB_03843 0.62 +0.2 4,036,675 + OHPLBJKB_03843 0.73 -0.1 4,036,675 + OHPLBJKB_03843 0.73 -0.8 4,036,675 + OHPLBJKB_03843 0.73 +0.3 4,036,675 + OHPLBJKB_03843 0.73 -1.1 4,036,675 + OHPLBJKB_03843 0.73 -0.8 4,036,675 + OHPLBJKB_03843 0.73 +0.7 4,036,676 - OHPLBJKB_03843 0.73 -0.6 4,036,676 - OHPLBJKB_03843 0.73 +0.2 4,036,676 - OHPLBJKB_03843 0.73 -0.3 4,036,678 + OHPLBJKB_03843 0.74 +0.9 4,036,679 - OHPLBJKB_03843 0.74 -0.8 4,036,685 + OHPLBJKB_03843 0.76 +1.1 4,036,719 + OHPLBJKB_03843 0.89 +1.1 4,036,742 - -0.3 4,036,757 + -1.8 4,036,758 - +0.0 4,036,758 - -0.1 4,036,758 - -0.4 4,036,758 - -0.6 4,036,759 + +0.4 4,036,833 + +0.8 4,036,842 + -0.5 4,036,842 + -0.7 4,036,842 + +0.6 4,036,842 + -0.2 4,036,843 - -0.5 4,036,895 - -1.0 4,036,901 + +1.0 4,036,914 - -0.6 4,036,914 - +0.3 4,036,914 - -1.2 4,036,914 - -0.3 4,036,970 + OHPLBJKB_03844 0.13 -1.3 4,036,971 - OHPLBJKB_03844 0.14 -0.5 4,037,071 + OHPLBJKB_03844 0.28 +0.0 4,037,071 + OHPLBJKB_03844 0.28 -0.6 4,037,090 + OHPLBJKB_03844 0.31 -0.4 4,037,149 + OHPLBJKB_03844 0.39 +0.8 4,037,209 + OHPLBJKB_03844 0.48 +0.0 4,037,209 + OHPLBJKB_03844 0.48 -0.7 4,037,268 - OHPLBJKB_03844 0.57 +0.4 4,037,379 - OHPLBJKB_03844 0.73 -0.3 4,037,402 + OHPLBJKB_03844 0.76 -0.2 4,037,402 + OHPLBJKB_03844 0.76 -0.6 4,037,553 + +0.6 4,037,689 - OHPLBJKB_03845 0.15 -0.3 4,037,789 + OHPLBJKB_03845 0.26 +0.2 4,037,789 + OHPLBJKB_03845 0.26 -0.6 4,037,790 - OHPLBJKB_03845 0.26 +0.4 4,037,801 - OHPLBJKB_03845 0.28 +0.7 4,037,801 - OHPLBJKB_03845 0.28 -0.2 4,037,899 - OHPLBJKB_03845 0.39 +0.1 4,037,899 - OHPLBJKB_03845 0.39 -0.1 4,037,899 - OHPLBJKB_03845 0.39 +0.6 4,037,899 - OHPLBJKB_03845 0.39 -1.8 4,037,899 - OHPLBJKB_03845 0.39 +0.1 4,038,054 + OHPLBJKB_03845 0.57 -0.5 4,038,055 - OHPLBJKB_03845 0.57 -0.2 4,038,055 - OHPLBJKB_03845 0.57 -2.6 4,038,064 - OHPLBJKB_03845 0.58 +0.4 4,038,064 - OHPLBJKB_03845 0.58 +0.0 4,038,388 - -0.3 4,038,388 - -0.4 4,038,419 - -0.4 4,038,419 - -0.4 4,038,532 + OHPLBJKB_03846 0.16 +0.0
Or see this region's nucleotide sequence