Experiment: T6 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02434 and OHPLBJKB_02435 are separated by 34 nucleotides OHPLBJKB_02435 and OHPLBJKB_02436 are separated by 52 nucleotides
OHPLBJKB_02434: OHPLBJKB_02434 - Cardiolipin synthase A, at 2,546,942 to 2,548,402
_02434
OHPLBJKB_02435: OHPLBJKB_02435 - hypothetical protein, at 2,548,437 to 2,548,766
_02435
OHPLBJKB_02436: OHPLBJKB_02436 - Vitamin B12 import ATP-binding protein BtuD, at 2,548,819 to 2,549,823
_02436
Position (kb)
2548
2549 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2547.525 kb on + strand, within OHPLBJKB_02434 at 2547.638 kb on + strand, within OHPLBJKB_02434 at 2547.638 kb on + strand, within OHPLBJKB_02434 at 2547.638 kb on + strand, within OHPLBJKB_02434 at 2547.639 kb on - strand, within OHPLBJKB_02434 at 2547.648 kb on - strand, within OHPLBJKB_02434 at 2547.664 kb on + strand, within OHPLBJKB_02434 at 2547.665 kb on - strand, within OHPLBJKB_02434 at 2547.665 kb on - strand, within OHPLBJKB_02434 at 2547.763 kb on + strand, within OHPLBJKB_02434 at 2547.763 kb on + strand, within OHPLBJKB_02434 at 2547.764 kb on - strand, within OHPLBJKB_02434 at 2547.767 kb on + strand, within OHPLBJKB_02434 at 2547.803 kb on - strand, within OHPLBJKB_02434 at 2547.830 kb on - strand, within OHPLBJKB_02434 at 2547.830 kb on - strand, within OHPLBJKB_02434 at 2547.830 kb on - strand, within OHPLBJKB_02434 at 2547.990 kb on + strand, within OHPLBJKB_02434 at 2548.036 kb on + strand, within OHPLBJKB_02434 at 2548.154 kb on - strand, within OHPLBJKB_02434 at 2548.182 kb on + strand, within OHPLBJKB_02434 at 2548.182 kb on + strand, within OHPLBJKB_02434 at 2548.182 kb on + strand, within OHPLBJKB_02434 at 2548.210 kb on + strand, within OHPLBJKB_02434 at 2548.299 kb on - strand at 2548.338 kb on + strand at 2548.400 kb on + strand at 2548.429 kb on + strand at 2548.430 kb on - strand at 2548.491 kb on + strand, within OHPLBJKB_02435 at 2548.811 kb on + strand at 2548.821 kb on - strand at 2548.960 kb on + strand, within OHPLBJKB_02436 at 2548.960 kb on + strand, within OHPLBJKB_02436 at 2549.045 kb on + strand, within OHPLBJKB_02436 at 2549.046 kb on - strand, within OHPLBJKB_02436 at 2549.046 kb on - strand, within OHPLBJKB_02436 at 2549.054 kb on - strand, within OHPLBJKB_02436 at 2549.078 kb on + strand, within OHPLBJKB_02436 at 2549.078 kb on + strand, within OHPLBJKB_02436 at 2549.078 kb on + strand, within OHPLBJKB_02436 at 2549.078 kb on + strand, within OHPLBJKB_02436 at 2549.078 kb on + strand, within OHPLBJKB_02436 at 2549.078 kb on + strand, within OHPLBJKB_02436 at 2549.079 kb on - strand, within OHPLBJKB_02436 at 2549.108 kb on + strand, within OHPLBJKB_02436 at 2549.141 kb on - strand, within OHPLBJKB_02436 at 2549.287 kb on - strand, within OHPLBJKB_02436 at 2549.436 kb on + strand, within OHPLBJKB_02436 at 2549.436 kb on + strand, within OHPLBJKB_02436 at 2549.437 kb on - strand, within OHPLBJKB_02436 at 2549.437 kb on - strand, within OHPLBJKB_02436 at 2549.473 kb on - strand, within OHPLBJKB_02436 at 2549.572 kb on + strand, within OHPLBJKB_02436 at 2549.637 kb on + strand, within OHPLBJKB_02436 at 2549.637 kb on + strand, within OHPLBJKB_02436 at 2549.665 kb on + strand, within OHPLBJKB_02436 at 2549.666 kb on - strand, within OHPLBJKB_02436
Per-strain Table
Position Strand Gene LocusTag Fraction T6 MOI1 remove 2,547,525 + OHPLBJKB_02434 0.40 -0.2 2,547,638 + OHPLBJKB_02434 0.48 -0.2 2,547,638 + OHPLBJKB_02434 0.48 +0.8 2,547,638 + OHPLBJKB_02434 0.48 -1.3 2,547,639 - OHPLBJKB_02434 0.48 +1.1 2,547,648 - OHPLBJKB_02434 0.48 -0.9 2,547,664 + OHPLBJKB_02434 0.49 -1.0 2,547,665 - OHPLBJKB_02434 0.49 +0.2 2,547,665 - OHPLBJKB_02434 0.49 -0.7 2,547,763 + OHPLBJKB_02434 0.56 -1.8 2,547,763 + OHPLBJKB_02434 0.56 -0.2 2,547,764 - OHPLBJKB_02434 0.56 -0.8 2,547,767 + OHPLBJKB_02434 0.56 -0.7 2,547,803 - OHPLBJKB_02434 0.59 +1.2 2,547,830 - OHPLBJKB_02434 0.61 -1.9 2,547,830 - OHPLBJKB_02434 0.61 -2.1 2,547,830 - OHPLBJKB_02434 0.61 -1.0 2,547,990 + OHPLBJKB_02434 0.72 -1.7 2,548,036 + OHPLBJKB_02434 0.75 -2.4 2,548,154 - OHPLBJKB_02434 0.83 -0.3 2,548,182 + OHPLBJKB_02434 0.85 -0.7 2,548,182 + OHPLBJKB_02434 0.85 -0.4 2,548,182 + OHPLBJKB_02434 0.85 +0.3 2,548,210 + OHPLBJKB_02434 0.87 +0.2 2,548,299 - +0.2 2,548,338 + -1.1 2,548,400 + -0.7 2,548,429 + +0.0 2,548,430 - -1.5 2,548,491 + OHPLBJKB_02435 0.16 -0.7 2,548,811 + -0.3 2,548,821 - +0.8 2,548,960 + OHPLBJKB_02436 0.14 -1.7 2,548,960 + OHPLBJKB_02436 0.14 +0.6 2,549,045 + OHPLBJKB_02436 0.22 -1.2 2,549,046 - OHPLBJKB_02436 0.23 +0.1 2,549,046 - OHPLBJKB_02436 0.23 -0.7 2,549,054 - OHPLBJKB_02436 0.23 -0.4 2,549,078 + OHPLBJKB_02436 0.26 -0.1 2,549,078 + OHPLBJKB_02436 0.26 +1.5 2,549,078 + OHPLBJKB_02436 0.26 -0.5 2,549,078 + OHPLBJKB_02436 0.26 -1.3 2,549,078 + OHPLBJKB_02436 0.26 -0.7 2,549,078 + OHPLBJKB_02436 0.26 +0.6 2,549,079 - OHPLBJKB_02436 0.26 -0.0 2,549,108 + OHPLBJKB_02436 0.29 +0.1 2,549,141 - OHPLBJKB_02436 0.32 -0.3 2,549,287 - OHPLBJKB_02436 0.47 +0.3 2,549,436 + OHPLBJKB_02436 0.61 +2.2 2,549,436 + OHPLBJKB_02436 0.61 +0.9 2,549,437 - OHPLBJKB_02436 0.61 +0.1 2,549,437 - OHPLBJKB_02436 0.61 +0.1 2,549,473 - OHPLBJKB_02436 0.65 -1.0 2,549,572 + OHPLBJKB_02436 0.75 -1.2 2,549,637 + OHPLBJKB_02436 0.81 -0.1 2,549,637 + OHPLBJKB_02436 0.81 -1.0 2,549,665 + OHPLBJKB_02436 0.84 -0.3 2,549,666 - OHPLBJKB_02436 0.84 -0.2
Or see this region's nucleotide sequence