Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00706

Experiment: T6 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00705 and OHPLBJKB_00706 overlap by 1 nucleotidesOHPLBJKB_00706 and OHPLBJKB_00707 overlap by 8 nucleotidesOHPLBJKB_00707 and OHPLBJKB_00708 overlap by 8 nucleotidesOHPLBJKB_00708 and OHPLBJKB_00709 are separated by 12 nucleotides OHPLBJKB_00705: OHPLBJKB_00705 - Hydrogenase-2 large chain, at 723,082 to 724,785 _00705 OHPLBJKB_00706: OHPLBJKB_00706 - Hydrogenase 2 maturation protease, at 724,785 to 725,279 _00706 OHPLBJKB_00707: OHPLBJKB_00707 - Hydrogenase-2 operon protein HybE, at 725,272 to 725,760 _00707 OHPLBJKB_00708: OHPLBJKB_00708 - Hydrogenase maturation factor HybF, at 725,753 to 726,094 _00708 OHPLBJKB_00709: OHPLBJKB_00709 - Hydrogenase maturation factor HybG, at 726,107 to 726,355 _00709 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1at 723.805 kb on + strand, within OHPLBJKB_00705at 723.805 kb on + strand, within OHPLBJKB_00705at 723.805 kb on + strand, within OHPLBJKB_00705at 723.805 kb on + strand, within OHPLBJKB_00705at 723.805 kb on + strand, within OHPLBJKB_00705at 723.805 kb on + strand, within OHPLBJKB_00705at 723.806 kb on - strand, within OHPLBJKB_00705at 723.806 kb on - strand, within OHPLBJKB_00705at 723.806 kb on - strand, within OHPLBJKB_00705at 723.806 kb on - strand, within OHPLBJKB_00705at 723.853 kb on + strand, within OHPLBJKB_00705at 723.853 kb on + strand, within OHPLBJKB_00705at 723.854 kb on - strand, within OHPLBJKB_00705at 723.854 kb on - strand, within OHPLBJKB_00705at 723.854 kb on - strand, within OHPLBJKB_00705at 723.854 kb on - strand, within OHPLBJKB_00705at 723.854 kb on - strand, within OHPLBJKB_00705at 723.855 kb on + strand, within OHPLBJKB_00705at 723.873 kb on + strand, within OHPLBJKB_00705at 723.873 kb on + strand, within OHPLBJKB_00705at 723.873 kb on + strand, within OHPLBJKB_00705at 723.874 kb on - strand, within OHPLBJKB_00705at 723.925 kb on + strand, within OHPLBJKB_00705at 723.925 kb on + strand, within OHPLBJKB_00705at 723.926 kb on - strand, within OHPLBJKB_00705at 723.926 kb on - strand, within OHPLBJKB_00705at 723.926 kb on - strand, within OHPLBJKB_00705at 724.045 kb on + strand, within OHPLBJKB_00705at 724.046 kb on - strand, within OHPLBJKB_00705at 724.088 kb on - strand, within OHPLBJKB_00705at 724.089 kb on + strand, within OHPLBJKB_00705at 724.089 kb on + strand, within OHPLBJKB_00705at 724.090 kb on - strand, within OHPLBJKB_00705at 724.139 kb on - strand, within OHPLBJKB_00705at 724.165 kb on + strand, within OHPLBJKB_00705at 724.165 kb on + strand, within OHPLBJKB_00705at 724.166 kb on - strand, within OHPLBJKB_00705at 724.206 kb on - strand, within OHPLBJKB_00705at 724.225 kb on - strand, within OHPLBJKB_00705at 724.225 kb on - strand, within OHPLBJKB_00705at 724.227 kb on + strand, within OHPLBJKB_00705at 724.227 kb on + strand, within OHPLBJKB_00705at 724.227 kb on + strand, within OHPLBJKB_00705at 724.228 kb on - strand, within OHPLBJKB_00705at 724.228 kb on - strand, within OHPLBJKB_00705at 724.228 kb on - strand, within OHPLBJKB_00705at 724.228 kb on - strand, within OHPLBJKB_00705at 724.228 kb on - strand, within OHPLBJKB_00705at 724.261 kb on - strand, within OHPLBJKB_00705at 724.294 kb on + strand, within OHPLBJKB_00705at 724.353 kb on + strand, within OHPLBJKB_00705at 724.356 kb on + strand, within OHPLBJKB_00705at 724.409 kb on - strand, within OHPLBJKB_00705at 724.543 kb on - strand, within OHPLBJKB_00705at 724.555 kb on - strand, within OHPLBJKB_00705at 724.568 kb on - strand, within OHPLBJKB_00705at 724.568 kb on - strand, within OHPLBJKB_00705at 724.568 kb on - strand, within OHPLBJKB_00705at 724.568 kb on - strand, within OHPLBJKB_00705at 724.568 kb on - strand, within OHPLBJKB_00705at 724.696 kb on - strandat 724.739 kb on + strandat 724.740 kb on - strandat 724.740 kb on - strandat 724.790 kb on + strandat 724.791 kb on - strandat 724.791 kb on - strandat 724.791 kb on - strandat 724.795 kb on + strandat 724.801 kb on + strandat 724.802 kb on - strandat 724.872 kb on + strand, within OHPLBJKB_00706at 724.872 kb on + strand, within OHPLBJKB_00706at 724.872 kb on + strand, within OHPLBJKB_00706at 724.873 kb on - strand, within OHPLBJKB_00706at 724.887 kb on + strand, within OHPLBJKB_00706at 724.887 kb on + strand, within OHPLBJKB_00706at 724.888 kb on - strand, within OHPLBJKB_00706at 725.318 kb on + strandat 725.393 kb on - strand, within OHPLBJKB_00707at 725.393 kb on - strand, within OHPLBJKB_00707at 725.407 kb on - strand, within OHPLBJKB_00707at 725.544 kb on + strand, within OHPLBJKB_00707at 725.544 kb on + strand, within OHPLBJKB_00707at 725.585 kb on - strand, within OHPLBJKB_00707at 725.702 kb on + strand, within OHPLBJKB_00707at 725.702 kb on + strand, within OHPLBJKB_00707at 725.821 kb on + strand, within OHPLBJKB_00708at 725.822 kb on - strand, within OHPLBJKB_00708at 725.937 kb on + strand, within OHPLBJKB_00708at 725.937 kb on + strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.938 kb on - strand, within OHPLBJKB_00708at 725.941 kb on + strand, within OHPLBJKB_00708at 725.942 kb on - strand, within OHPLBJKB_00708at 725.942 kb on - strand, within OHPLBJKB_00708at 725.948 kb on + strand, within OHPLBJKB_00708at 726.105 kb on + strandat 726.105 kb on + strandat 726.105 kb on + strandat 726.105 kb on + strandat 726.106 kb on - strandat 726.113 kb on - strandat 726.152 kb on - strand, within OHPLBJKB_00709at 726.152 kb on - strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.177 kb on + strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.178 kb on - strand, within OHPLBJKB_00709at 726.185 kb on - strand, within OHPLBJKB_00709at 726.185 kb on - strand, within OHPLBJKB_00709at 726.185 kb on - strand, within OHPLBJKB_00709at 726.238 kb on - strand, within OHPLBJKB_00709

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Per-strain Table

Position Strand Gene LocusTag Fraction T6 MOI1
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723,805 + OHPLBJKB_00705 0.42 -0.1
723,805 + OHPLBJKB_00705 0.42 -0.1
723,805 + OHPLBJKB_00705 0.42 +0.6
723,805 + OHPLBJKB_00705 0.42 +0.3
723,805 + OHPLBJKB_00705 0.42 -0.2
723,805 + OHPLBJKB_00705 0.42 -0.8
723,806 - OHPLBJKB_00705 0.42 +0.1
723,806 - OHPLBJKB_00705 0.42 +0.2
723,806 - OHPLBJKB_00705 0.42 +0.0
723,806 - OHPLBJKB_00705 0.42 +0.8
723,853 + OHPLBJKB_00705 0.45 +0.6
723,853 + OHPLBJKB_00705 0.45 -1.3
723,854 - OHPLBJKB_00705 0.45 +0.6
723,854 - OHPLBJKB_00705 0.45 -0.1
723,854 - OHPLBJKB_00705 0.45 -0.5
723,854 - OHPLBJKB_00705 0.45 +0.1
723,854 - OHPLBJKB_00705 0.45 -0.9
723,855 + OHPLBJKB_00705 0.45 -0.6
723,873 + OHPLBJKB_00705 0.46 +0.8
723,873 + OHPLBJKB_00705 0.46 -0.5
723,873 + OHPLBJKB_00705 0.46 -0.3
723,874 - OHPLBJKB_00705 0.46 -0.5
723,925 + OHPLBJKB_00705 0.49 -1.1
723,925 + OHPLBJKB_00705 0.49 -0.7
723,926 - OHPLBJKB_00705 0.50 -1.2
723,926 - OHPLBJKB_00705 0.50 -1.1
723,926 - OHPLBJKB_00705 0.50 +0.1
724,045 + OHPLBJKB_00705 0.57 -0.1
724,046 - OHPLBJKB_00705 0.57 -0.7
724,088 - OHPLBJKB_00705 0.59 -1.2
724,089 + OHPLBJKB_00705 0.59 +0.3
724,089 + OHPLBJKB_00705 0.59 -0.2
724,090 - OHPLBJKB_00705 0.59 +0.1
724,139 - OHPLBJKB_00705 0.62 +1.3
724,165 + OHPLBJKB_00705 0.64 +0.1
724,165 + OHPLBJKB_00705 0.64 +1.2
724,166 - OHPLBJKB_00705 0.64 +0.3
724,206 - OHPLBJKB_00705 0.66 -1.3
724,225 - OHPLBJKB_00705 0.67 -0.6
724,225 - OHPLBJKB_00705 0.67 +0.3
724,227 + OHPLBJKB_00705 0.67 +0.5
724,227 + OHPLBJKB_00705 0.67 +1.1
724,227 + OHPLBJKB_00705 0.67 +0.1
724,228 - OHPLBJKB_00705 0.67 -1.2
724,228 - OHPLBJKB_00705 0.67 +0.5
724,228 - OHPLBJKB_00705 0.67 -0.6
724,228 - OHPLBJKB_00705 0.67 -1.7
724,228 - OHPLBJKB_00705 0.67 +0.5
724,261 - OHPLBJKB_00705 0.69 +0.1
724,294 + OHPLBJKB_00705 0.71 -0.3
724,353 + OHPLBJKB_00705 0.75 +0.0
724,356 + OHPLBJKB_00705 0.75 -0.4
724,409 - OHPLBJKB_00705 0.78 +0.6
724,543 - OHPLBJKB_00705 0.86 +1.0
724,555 - OHPLBJKB_00705 0.86 +0.1
724,568 - OHPLBJKB_00705 0.87 +0.1
724,568 - OHPLBJKB_00705 0.87 +0.6
724,568 - OHPLBJKB_00705 0.87 +0.6
724,568 - OHPLBJKB_00705 0.87 +1.0
724,568 - OHPLBJKB_00705 0.87 -0.1
724,696 - +0.6
724,739 + +0.5
724,740 - -0.4
724,740 - -0.1
724,790 + -0.0
724,791 - -0.0
724,791 - -1.3
724,791 - -2.7
724,795 + +0.3
724,801 + -0.2
724,802 - +1.5
724,872 + OHPLBJKB_00706 0.18 -0.7
724,872 + OHPLBJKB_00706 0.18 +0.3
724,872 + OHPLBJKB_00706 0.18 -1.4
724,873 - OHPLBJKB_00706 0.18 -0.2
724,887 + OHPLBJKB_00706 0.21 -0.5
724,887 + OHPLBJKB_00706 0.21 +0.0
724,888 - OHPLBJKB_00706 0.21 -1.8
725,318 + -0.4
725,393 - OHPLBJKB_00707 0.25 +0.6
725,393 - OHPLBJKB_00707 0.25 +0.6
725,407 - OHPLBJKB_00707 0.28 +1.4
725,544 + OHPLBJKB_00707 0.56 +1.6
725,544 + OHPLBJKB_00707 0.56 -0.4
725,585 - OHPLBJKB_00707 0.64 +0.2
725,702 + OHPLBJKB_00707 0.88 -0.1
725,702 + OHPLBJKB_00707 0.88 +0.4
725,821 + OHPLBJKB_00708 0.20 -0.8
725,822 - OHPLBJKB_00708 0.20 -0.4
725,937 + OHPLBJKB_00708 0.54 -0.1
725,937 + OHPLBJKB_00708 0.54 +0.3
725,938 - OHPLBJKB_00708 0.54 -0.7
725,938 - OHPLBJKB_00708 0.54 -0.6
725,938 - OHPLBJKB_00708 0.54 -0.3
725,938 - OHPLBJKB_00708 0.54 -0.2
725,938 - OHPLBJKB_00708 0.54 +0.1
725,941 + OHPLBJKB_00708 0.55 +0.4
725,942 - OHPLBJKB_00708 0.55 +0.5
725,942 - OHPLBJKB_00708 0.55 -0.5
725,948 + OHPLBJKB_00708 0.57 -0.2
726,105 + -1.0
726,105 + -0.1
726,105 + -0.2
726,105 + -1.3
726,106 - -0.7
726,113 - -0.4
726,152 - OHPLBJKB_00709 0.18 +0.0
726,152 - OHPLBJKB_00709 0.18 +0.1
726,177 + OHPLBJKB_00709 0.28 -0.0
726,177 + OHPLBJKB_00709 0.28 +0.2
726,177 + OHPLBJKB_00709 0.28 +0.9
726,177 + OHPLBJKB_00709 0.28 -0.5
726,177 + OHPLBJKB_00709 0.28 +0.4
726,177 + OHPLBJKB_00709 0.28 +0.4
726,177 + OHPLBJKB_00709 0.28 -0.6
726,177 + OHPLBJKB_00709 0.28 +0.3
726,177 + OHPLBJKB_00709 0.28 -0.8
726,178 - OHPLBJKB_00709 0.29 -1.2
726,178 - OHPLBJKB_00709 0.29 +0.6
726,178 - OHPLBJKB_00709 0.29 -0.2
726,178 - OHPLBJKB_00709 0.29 +0.7
726,178 - OHPLBJKB_00709 0.29 +0.5
726,178 - OHPLBJKB_00709 0.29 +0.9
726,185 - OHPLBJKB_00709 0.31 -0.4
726,185 - OHPLBJKB_00709 0.31 +0.3
726,185 - OHPLBJKB_00709 0.31 +0.6
726,238 - OHPLBJKB_00709 0.53 -0.6

Or see this region's nucleotide sequence