Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00438

Experiment: T6 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00436 and OHPLBJKB_00437 are separated by 430 nucleotidesOHPLBJKB_00437 and OHPLBJKB_00438 are separated by 105 nucleotidesOHPLBJKB_00438 and OHPLBJKB_00439 overlap by 144 nucleotides OHPLBJKB_00436: OHPLBJKB_00436 - Putative amino-acid ABC transporter-binding protein YhdW, at 446,491 to 447,516 _00436 OHPLBJKB_00437: OHPLBJKB_00437 - hypothetical protein, at 447,947 to 448,168 _00437 OHPLBJKB_00438: OHPLBJKB_00438 - hypothetical protein, at 448,274 to 448,564 _00438 OHPLBJKB_00439: OHPLBJKB_00439 - Multidrug export protein AcrF, at 448,421 to 451,525 _00439 Position (kb) 448 449Strain fitness (log2 ratio) -1 0 1 2at 447.274 kb on - strand, within OHPLBJKB_00436at 447.275 kb on + strand, within OHPLBJKB_00436at 447.275 kb on + strand, within OHPLBJKB_00436at 447.275 kb on + strand, within OHPLBJKB_00436at 447.275 kb on + strand, within OHPLBJKB_00436at 447.275 kb on + strand, within OHPLBJKB_00436at 447.276 kb on - strand, within OHPLBJKB_00436at 447.276 kb on - strand, within OHPLBJKB_00436at 447.276 kb on - strand, within OHPLBJKB_00436at 447.302 kb on - strand, within OHPLBJKB_00436at 447.328 kb on - strand, within OHPLBJKB_00436at 447.328 kb on - strand, within OHPLBJKB_00436at 447.328 kb on - strand, within OHPLBJKB_00436at 447.328 kb on - strand, within OHPLBJKB_00436at 447.328 kb on - strand, within OHPLBJKB_00436at 447.328 kb on - strand, within OHPLBJKB_00436at 447.339 kb on + strand, within OHPLBJKB_00436at 447.368 kb on + strand, within OHPLBJKB_00436at 447.383 kb on - strand, within OHPLBJKB_00436at 447.547 kb on - strandat 447.548 kb on + strandat 447.549 kb on - strandat 447.571 kb on + strandat 447.572 kb on - strandat 447.572 kb on - strandat 447.839 kb on + strandat 447.884 kb on - strandat 447.898 kb on - strandat 448.010 kb on - strand, within OHPLBJKB_00437at 448.052 kb on - strand, within OHPLBJKB_00437at 448.057 kb on + strand, within OHPLBJKB_00437at 448.175 kb on - strandat 448.203 kb on - strandat 448.203 kb on - strandat 448.207 kb on + strandat 448.208 kb on - strandat 448.217 kb on - strandat 448.322 kb on - strand, within OHPLBJKB_00438at 448.332 kb on + strand, within OHPLBJKB_00438at 448.351 kb on + strand, within OHPLBJKB_00438at 448.558 kb on + strandat 448.558 kb on + strandat 448.572 kb on - strandat 448.572 kb on - strandat 448.572 kb on - strandat 448.621 kb on + strandat 448.621 kb on + strandat 448.621 kb on + strandat 448.622 kb on - strandat 448.622 kb on - strandat 448.626 kb on - strandat 448.626 kb on - strandat 448.658 kb on - strandat 448.748 kb on - strand, within OHPLBJKB_00439at 448.748 kb on - strand, within OHPLBJKB_00439at 448.752 kb on + strand, within OHPLBJKB_00439at 448.752 kb on + strand, within OHPLBJKB_00439at 448.753 kb on - strand, within OHPLBJKB_00439at 448.825 kb on + strand, within OHPLBJKB_00439at 448.825 kb on + strand, within OHPLBJKB_00439at 448.825 kb on + strand, within OHPLBJKB_00439at 448.854 kb on + strand, within OHPLBJKB_00439at 448.854 kb on + strand, within OHPLBJKB_00439at 448.855 kb on - strand, within OHPLBJKB_00439at 448.855 kb on - strand, within OHPLBJKB_00439at 448.898 kb on + strand, within OHPLBJKB_00439at 448.946 kb on - strand, within OHPLBJKB_00439at 448.960 kb on - strand, within OHPLBJKB_00439at 449.073 kb on + strand, within OHPLBJKB_00439at 449.074 kb on - strand, within OHPLBJKB_00439at 449.097 kb on + strand, within OHPLBJKB_00439at 449.160 kb on + strand, within OHPLBJKB_00439at 449.160 kb on + strand, within OHPLBJKB_00439at 449.161 kb on - strand, within OHPLBJKB_00439at 449.189 kb on - strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.214 kb on + strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.215 kb on - strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.256 kb on + strand, within OHPLBJKB_00439at 449.257 kb on - strand, within OHPLBJKB_00439at 449.257 kb on - strand, within OHPLBJKB_00439at 449.312 kb on + strand, within OHPLBJKB_00439at 449.313 kb on - strand, within OHPLBJKB_00439at 449.313 kb on - strand, within OHPLBJKB_00439at 449.313 kb on - strand, within OHPLBJKB_00439at 449.417 kb on - strand, within OHPLBJKB_00439at 449.477 kb on + strand, within OHPLBJKB_00439at 449.477 kb on + strand, within OHPLBJKB_00439at 449.527 kb on + strand, within OHPLBJKB_00439at 449.527 kb on + strand, within OHPLBJKB_00439at 449.528 kb on - strand, within OHPLBJKB_00439

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Per-strain Table

Position Strand Gene LocusTag Fraction T6 MOI1
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447,274 - OHPLBJKB_00436 0.76 +0.9
447,275 + OHPLBJKB_00436 0.76 +0.6
447,275 + OHPLBJKB_00436 0.76 +0.5
447,275 + OHPLBJKB_00436 0.76 -0.8
447,275 + OHPLBJKB_00436 0.76 +0.5
447,275 + OHPLBJKB_00436 0.76 +0.4
447,276 - OHPLBJKB_00436 0.77 +0.2
447,276 - OHPLBJKB_00436 0.77 -0.2
447,276 - OHPLBJKB_00436 0.77 -0.2
447,302 - OHPLBJKB_00436 0.79 +0.5
447,328 - OHPLBJKB_00436 0.82 -0.0
447,328 - OHPLBJKB_00436 0.82 -0.0
447,328 - OHPLBJKB_00436 0.82 -0.6
447,328 - OHPLBJKB_00436 0.82 -0.1
447,328 - OHPLBJKB_00436 0.82 +0.9
447,328 - OHPLBJKB_00436 0.82 -1.0
447,339 + OHPLBJKB_00436 0.83 -0.9
447,368 + OHPLBJKB_00436 0.85 -1.3
447,383 - OHPLBJKB_00436 0.87 -1.2
447,547 - -0.2
447,548 + +0.6
447,549 - -0.6
447,571 + +0.8
447,572 - +0.2
447,572 - +0.3
447,839 + -0.5
447,884 - -0.7
447,898 - -0.0
448,010 - OHPLBJKB_00437 0.28 -0.6
448,052 - OHPLBJKB_00437 0.47 -0.6
448,057 + OHPLBJKB_00437 0.50 +0.1
448,175 - -0.1
448,203 - -0.0
448,203 - -1.7
448,207 + +0.7
448,208 - -0.6
448,217 - +0.1
448,322 - OHPLBJKB_00438 0.16 -1.7
448,332 + OHPLBJKB_00438 0.20 +0.8
448,351 + OHPLBJKB_00438 0.26 -0.1
448,558 + +0.0
448,558 + +0.7
448,572 - +0.7
448,572 - +0.9
448,572 - -0.8
448,621 + +0.8
448,621 + -0.6
448,621 + -0.0
448,622 - -0.1
448,622 - +1.9
448,626 - -0.1
448,626 - +0.1
448,658 - +1.0
448,748 - OHPLBJKB_00439 0.11 +0.7
448,748 - OHPLBJKB_00439 0.11 -1.1
448,752 + OHPLBJKB_00439 0.11 -0.5
448,752 + OHPLBJKB_00439 0.11 +0.2
448,753 - OHPLBJKB_00439 0.11 +1.0
448,825 + OHPLBJKB_00439 0.13 -0.9
448,825 + OHPLBJKB_00439 0.13 +1.0
448,825 + OHPLBJKB_00439 0.13 -0.1
448,854 + OHPLBJKB_00439 0.14 -0.6
448,854 + OHPLBJKB_00439 0.14 -0.3
448,855 - OHPLBJKB_00439 0.14 +0.1
448,855 - OHPLBJKB_00439 0.14 +0.4
448,898 + OHPLBJKB_00439 0.15 +0.6
448,946 - OHPLBJKB_00439 0.17 -0.3
448,960 - OHPLBJKB_00439 0.17 +0.5
449,073 + OHPLBJKB_00439 0.21 -1.5
449,074 - OHPLBJKB_00439 0.21 -0.2
449,097 + OHPLBJKB_00439 0.22 -0.4
449,160 + OHPLBJKB_00439 0.24 +0.6
449,160 + OHPLBJKB_00439 0.24 -0.1
449,161 - OHPLBJKB_00439 0.24 -1.2
449,189 - OHPLBJKB_00439 0.25 +1.9
449,214 + OHPLBJKB_00439 0.26 +0.2
449,214 + OHPLBJKB_00439 0.26 +0.1
449,214 + OHPLBJKB_00439 0.26 -0.5
449,214 + OHPLBJKB_00439 0.26 -0.8
449,214 + OHPLBJKB_00439 0.26 +0.1
449,214 + OHPLBJKB_00439 0.26 -0.9
449,214 + OHPLBJKB_00439 0.26 -0.0
449,214 + OHPLBJKB_00439 0.26 -0.4
449,214 + OHPLBJKB_00439 0.26 +0.0
449,215 - OHPLBJKB_00439 0.26 +0.4
449,215 - OHPLBJKB_00439 0.26 -1.6
449,215 - OHPLBJKB_00439 0.26 +0.3
449,215 - OHPLBJKB_00439 0.26 -1.1
449,215 - OHPLBJKB_00439 0.26 -0.0
449,215 - OHPLBJKB_00439 0.26 -0.6
449,215 - OHPLBJKB_00439 0.26 -0.9
449,256 + OHPLBJKB_00439 0.27 +0.1
449,256 + OHPLBJKB_00439 0.27 -0.5
449,256 + OHPLBJKB_00439 0.27 +0.7
449,256 + OHPLBJKB_00439 0.27 +0.1
449,256 + OHPLBJKB_00439 0.27 +1.2
449,256 + OHPLBJKB_00439 0.27 +0.2
449,256 + OHPLBJKB_00439 0.27 +0.0
449,256 + OHPLBJKB_00439 0.27 -0.0
449,257 - OHPLBJKB_00439 0.27 +0.4
449,257 - OHPLBJKB_00439 0.27 -0.3
449,312 + OHPLBJKB_00439 0.29 -0.5
449,313 - OHPLBJKB_00439 0.29 -0.1
449,313 - OHPLBJKB_00439 0.29 +0.9
449,313 - OHPLBJKB_00439 0.29 +0.4
449,417 - OHPLBJKB_00439 0.32 -0.3
449,477 + OHPLBJKB_00439 0.34 +0.9
449,477 + OHPLBJKB_00439 0.34 +0.8
449,527 + OHPLBJKB_00439 0.36 +0.1
449,527 + OHPLBJKB_00439 0.36 -0.2
449,528 - OHPLBJKB_00439 0.36 +0.5

Or see this region's nucleotide sequence