Experiment: B-glucan from yeast (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS07195 and ABI39_RS07200 are separated by 4 nucleotides ABI39_RS07200 and ABI39_RS07205 are separated by 52 nucleotides ABI39_RS07205 and ABI39_RS07210 are separated by 130 nucleotides ABI39_RS07210 and ABI39_RS07215 overlap by 47 nucleotides ABI39_RS07215 and ABI39_RS07220 are separated by 86 nucleotides
ABI39_RS07195: ABI39_RS07195 - relaxase/mobilization nuclease domain-containing protein, at 1,985,085 to 1,986,005
_RS07195
ABI39_RS07200: ABI39_RS07200 - hypothetical protein, at 1,986,010 to 1,986,729
_RS07200
ABI39_RS07205: ABI39_RS07205 - helix-turn-helix domain-containing protein, at 1,986,782 to 1,987,114
_RS07205
ABI39_RS07210: ABI39_RS07210 - hypothetical protein, at 1,987,245 to 1,987,664
_RS07210
ABI39_RS07215: ABI39_RS07215 - hypothetical protein, at 1,987,618 to 1,987,869
_RS07215
ABI39_RS07220: ABI39_RS07220 - hypothetical protein, at 1,987,956 to 1,988,246
_RS07220
Position (kb) 1986
1987
1988 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1985.846 kb on + strand, within ABI39_RS07195 at 1985.846 kb on + strand, within ABI39_RS07195 at 1985.965 kb on + strand at 1986.137 kb on + strand, within ABI39_RS07200 at 1986.880 kb on - strand, within ABI39_RS07205 at 1986.907 kb on - strand, within ABI39_RS07205 at 1986.954 kb on - strand, within ABI39_RS07205 at 1987.138 kb on - strand at 1987.227 kb on + strand at 1987.228 kb on - strand at 1987.250 kb on + strand at 1987.250 kb on + strand at 1987.251 kb on - strand at 1987.371 kb on - strand, within ABI39_RS07210 at 1987.376 kb on + strand, within ABI39_RS07210 at 1987.424 kb on + strand, within ABI39_RS07210 at 1987.624 kb on - strand at 1987.748 kb on - strand, within ABI39_RS07215 at 1987.823 kb on - strand, within ABI39_RS07215 at 1987.863 kb on + strand at 1987.864 kb on - strand at 1987.864 kb on - strand at 1987.879 kb on - strand at 1987.928 kb on - strand at 1987.981 kb on - strand at 1988.001 kb on + strand, within ABI39_RS07220 at 1988.023 kb on - strand, within ABI39_RS07220 at 1988.024 kb on + strand, within ABI39_RS07220 at 1988.040 kb on - strand, within ABI39_RS07220 at 1988.044 kb on - strand, within ABI39_RS07220 at 1988.068 kb on - strand, within ABI39_RS07220
Per-strain Table
Position Strand Gene LocusTag Fraction B-glucan from yeast (C) remove 1,985,846 + ABI39_RS07195 0.83 -0.8 1,985,846 + ABI39_RS07195 0.83 -0.9 1,985,965 + +1.2 1,986,137 + ABI39_RS07200 0.18 -1.0 1,986,880 - ABI39_RS07205 0.29 +0.5 1,986,907 - ABI39_RS07205 0.38 +0.0 1,986,954 - ABI39_RS07205 0.52 +0.8 1,987,138 - -0.5 1,987,227 + -1.5 1,987,228 - -0.1 1,987,250 + -1.2 1,987,250 + -1.4 1,987,251 - +0.7 1,987,371 - ABI39_RS07210 0.30 +1.8 1,987,376 + ABI39_RS07210 0.31 +0.5 1,987,424 + ABI39_RS07210 0.43 -1.9 1,987,624 - +0.4 1,987,748 - ABI39_RS07215 0.52 +0.2 1,987,823 - ABI39_RS07215 0.81 -0.2 1,987,863 + +0.4 1,987,864 - -0.9 1,987,864 - -0.7 1,987,879 - +0.1 1,987,928 - -0.3 1,987,981 - -0.2 1,988,001 + ABI39_RS07220 0.15 -0.2 1,988,023 - ABI39_RS07220 0.23 +0.0 1,988,024 + ABI39_RS07220 0.23 -0.5 1,988,040 - ABI39_RS07220 0.29 -0.7 1,988,044 - ABI39_RS07220 0.30 -0.0 1,988,068 - ABI39_RS07220 0.38 +0.1
Or see this region's nucleotide sequence