Experiment: B-glucan from yeast (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01625 and ABI39_RS01630 are separated by 145 nucleotides ABI39_RS01630 and ABI39_RS01635 are separated by 130 nucleotides ABI39_RS01635 and ABI39_RS01640 are separated by 39 nucleotides
ABI39_RS01625: ABI39_RS01625 - TonB-dependent receptor, at 485,397 to 488,813
_RS01625
ABI39_RS01630: ABI39_RS01630 - FecR family protein, at 488,959 to 489,945
_RS01630
ABI39_RS01635: ABI39_RS01635 - RNA polymerase sigma-70 factor, at 490,076 to 490,657
_RS01635
ABI39_RS01640: ABI39_RS01640 - ABC-F family ATP-binding cassette domain-containing protein, at 490,697 to 492,331
_RS01640
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 488.147 kb on + strand, within ABI39_RS01625 at 488.193 kb on + strand, within ABI39_RS01625 at 488.193 kb on + strand, within ABI39_RS01625 at 488.197 kb on - strand, within ABI39_RS01625 at 488.213 kb on + strand, within ABI39_RS01625 at 488.213 kb on + strand, within ABI39_RS01625 at 488.253 kb on + strand, within ABI39_RS01625 at 488.292 kb on + strand, within ABI39_RS01625 at 488.366 kb on + strand, within ABI39_RS01625 at 488.393 kb on + strand, within ABI39_RS01625 at 488.400 kb on + strand, within ABI39_RS01625 at 488.403 kb on - strand, within ABI39_RS01625 at 488.447 kb on + strand, within ABI39_RS01625 at 488.448 kb on - strand, within ABI39_RS01625 at 488.449 kb on + strand, within ABI39_RS01625 at 488.449 kb on + strand, within ABI39_RS01625 at 488.451 kb on + strand, within ABI39_RS01625 at 488.460 kb on - strand, within ABI39_RS01625 at 488.584 kb on + strand at 488.593 kb on + strand at 488.715 kb on + strand at 488.716 kb on - strand at 488.718 kb on + strand at 488.719 kb on - strand at 488.805 kb on - strand at 488.829 kb on + strand at 488.840 kb on - strand at 488.976 kb on - strand at 489.103 kb on - strand, within ABI39_RS01630 at 489.186 kb on + strand, within ABI39_RS01630 at 489.251 kb on + strand, within ABI39_RS01630 at 489.254 kb on + strand, within ABI39_RS01630 at 489.299 kb on - strand, within ABI39_RS01630 at 489.334 kb on - strand, within ABI39_RS01630 at 489.435 kb on + strand, within ABI39_RS01630 at 489.481 kb on - strand, within ABI39_RS01630 at 489.626 kb on + strand, within ABI39_RS01630 at 489.877 kb on + strand at 489.915 kb on + strand at 489.918 kb on + strand at 489.920 kb on + strand at 490.202 kb on - strand, within ABI39_RS01635 at 490.481 kb on - strand, within ABI39_RS01635 at 490.523 kb on - strand, within ABI39_RS01635 at 490.535 kb on - strand, within ABI39_RS01635 at 490.535 kb on - strand, within ABI39_RS01635 at 490.698 kb on + strand at 490.749 kb on + strand at 490.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction B-glucan from yeast (C) remove 488,147 + ABI39_RS01625 0.80 -0.6 488,193 + ABI39_RS01625 0.82 -0.6 488,193 + ABI39_RS01625 0.82 -0.4 488,197 - ABI39_RS01625 0.82 +0.5 488,213 + ABI39_RS01625 0.82 -0.6 488,213 + ABI39_RS01625 0.82 -0.4 488,253 + ABI39_RS01625 0.84 -0.3 488,292 + ABI39_RS01625 0.85 -0.0 488,366 + ABI39_RS01625 0.87 +0.4 488,393 + ABI39_RS01625 0.88 +0.1 488,400 + ABI39_RS01625 0.88 -0.0 488,403 - ABI39_RS01625 0.88 -0.2 488,447 + ABI39_RS01625 0.89 -2.0 488,448 - ABI39_RS01625 0.89 -0.2 488,449 + ABI39_RS01625 0.89 +0.0 488,449 + ABI39_RS01625 0.89 +0.7 488,451 + ABI39_RS01625 0.89 +0.0 488,460 - ABI39_RS01625 0.90 +0.5 488,584 + -0.4 488,593 + +0.3 488,715 + -0.5 488,716 - -0.1 488,718 + +0.4 488,719 - -0.5 488,805 - +0.1 488,829 + +0.1 488,840 - -1.5 488,976 - -0.7 489,103 - ABI39_RS01630 0.15 -1.2 489,186 + ABI39_RS01630 0.23 +0.2 489,251 + ABI39_RS01630 0.30 -0.0 489,254 + ABI39_RS01630 0.30 -1.0 489,299 - ABI39_RS01630 0.34 -1.1 489,334 - ABI39_RS01630 0.38 -1.3 489,435 + ABI39_RS01630 0.48 +0.7 489,481 - ABI39_RS01630 0.53 -0.9 489,626 + ABI39_RS01630 0.68 -0.5 489,877 + +0.5 489,915 + +0.1 489,918 + -0.3 489,920 + -0.9 490,202 - ABI39_RS01635 0.22 +0.0 490,481 - ABI39_RS01635 0.70 -0.2 490,523 - ABI39_RS01635 0.77 -1.0 490,535 - ABI39_RS01635 0.79 -0.5 490,535 - ABI39_RS01635 0.79 -1.1 490,698 + +0.6 490,749 + -0.9 490,749 + +0.1
Or see this region's nucleotide sequence