Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16825

Experiment: Bas55

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpoN and lptB are separated by 47 nucleotideslptB and lptA are separated by 6 nucleotideslptA and lptC overlap by 32 nucleotideslptC and kdsC overlap by 4 nucleotides HEPCGN_16815: rpoN - RNA polymerase factor sigma-54, at 2,115,838 to 2,117,271 rpoN HEPCGN_16820: lptB - LPS export ABC transporter ATP-binding protein, at 2,117,319 to 2,118,044 lptB HEPCGN_16825: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 2,118,051 to 2,118,608 lptA HEPCGN_16830: lptC - LPS export ABC transporter periplasmic protein LptC, at 2,118,577 to 2,119,152 lptC HEPCGN_16835: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 2,119,149 to 2,119,715 kdsC Position (kb) 2118 2119Strain fitness (log2 ratio) -1 0 1at 2118.685 kb on - strand, within lptCat 2118.699 kb on - strand, within lptCat 2118.724 kb on - strand, within lptCat 2119.398 kb on - strand, within kdsCat 2119.430 kb on - strand, within kdsCat 2119.587 kb on - strand, within kdsCat 2119.587 kb on - strand, within kdsC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas55
remove
2,118,685 - lptC HEPCGN_16830 0.19 -1.7
2,118,699 - lptC HEPCGN_16830 0.21 -0.3
2,118,724 - lptC HEPCGN_16830 0.26 -0.7
2,119,398 - kdsC HEPCGN_16835 0.44 -0.6
2,119,430 - kdsC HEPCGN_16835 0.50 -0.8
2,119,587 - kdsC HEPCGN_16835 0.77 -0.7
2,119,587 - kdsC HEPCGN_16835 0.77 +0.3

Or see this region's nucleotide sequence