Strain Fitness in Escherichia coli ECOR38 around HEPCGN_14245

Experiment: Bas55

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_14240 and HEPCGN_14245 overlap by 1 nucleotidesHEPCGN_14245 and HEPCGN_14250 are separated by 473 nucleotides HEPCGN_14240: HEPCGN_14240 - IS3 family transposase, at 1,602,520 to 1,602,999 _14240 HEPCGN_14245: HEPCGN_14245 - IS3 family transposase, at 1,602,999 to 1,603,325 _14245 HEPCGN_14250: HEPCGN_14250 - pyridoxal phosphate-dependent aminotransferase, at 1,603,799 to 1,604,977 _14250 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -1 0 1at 1602.827 kb on + strand, within HEPCGN_14240at 1603.352 kb on + strandat 1603.353 kb on - strandat 1603.567 kb on - strandat 1603.700 kb on + strandat 1603.977 kb on + strand, within HEPCGN_14250at 1603.980 kb on + strand, within HEPCGN_14250at 1603.981 kb on - strand, within HEPCGN_14250at 1604.126 kb on - strand, within HEPCGN_14250at 1604.147 kb on + strand, within HEPCGN_14250at 1604.155 kb on + strand, within HEPCGN_14250at 1604.159 kb on - strand, within HEPCGN_14250at 1604.261 kb on - strand, within HEPCGN_14250

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas55
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1,602,827 + HEPCGN_14240 0.64 +0.2
1,603,352 + -0.1
1,603,353 - -0.2
1,603,567 - +0.6
1,603,700 + -0.8
1,603,977 + HEPCGN_14250 0.15 +0.8
1,603,980 + HEPCGN_14250 0.15 -0.5
1,603,981 - HEPCGN_14250 0.15 -0.1
1,604,126 - HEPCGN_14250 0.28 +0.3
1,604,147 + HEPCGN_14250 0.30 +0.8
1,604,155 + HEPCGN_14250 0.30 -0.7
1,604,159 - HEPCGN_14250 0.31 -1.0
1,604,261 - HEPCGN_14250 0.39 +0.5

Or see this region's nucleotide sequence