Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12260

Experiment: Bas55

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas55
1,194,330	+	yijO	HEPCGN_12250	0.23	-0.3
1,194,330	+	yijO	HEPCGN_12250	0.23	-0.2
1,194,331	-	yijO	HEPCGN_12250	0.23	+1.4
1,194,331	-	yijO	HEPCGN_12250	0.23	-0.2
1,194,331	-	yijO	HEPCGN_12250	0.23	-0.3
1,194,662	+	yijO	HEPCGN_12250	0.62	-0.2
1,194,675	+	yijO	HEPCGN_12250	0.64	-0.2
1,194,717	+	yijO	HEPCGN_12250	0.69	-0.1
1,194,718	-	yijO	HEPCGN_12250	0.69	+0.6
1,194,719	+	yijO	HEPCGN_12250	0.69	-0.1
1,194,733	-	yijO	HEPCGN_12250	0.71	+0.6
1,194,810	-	yijO	HEPCGN_12250	0.80	+1.1
1,194,818	-	yijO	HEPCGN_12250	0.81	+0.0
1,194,829	-	yijO	HEPCGN_12250	0.82	+0.4
1,194,829	-	yijO	HEPCGN_12250	0.82	-0.3
1,194,882	+	yijO	HEPCGN_12250	0.88	+0.4
1,194,883	-	yijO	HEPCGN_12250	0.88	+0.8
1,194,981	+				+0.2
1,194,982	-				+0.8
1,195,059	-	frwB	HEPCGN_12255	0.26	-0.4
1,195,165	+	frwB	HEPCGN_12255	0.57	-1.1
1,195,223	-	frwB	HEPCGN_12255	0.74	+0.1
1,195,257	+	frwB	HEPCGN_12255	0.84	-0.7
1,195,258	-	frwB	HEPCGN_12255	0.84	+1.0
1,195,258	-	frwB	HEPCGN_12255	0.84	+0.1
1,195,259	+	frwB	HEPCGN_12255	0.85	+0.6
1,195,259	+	frwB	HEPCGN_12255	0.85	+0.5
1,195,259	+	frwB	HEPCGN_12255	0.85	+0.2
1,195,259	+	frwB	HEPCGN_12255	0.85	+0.8
1,195,260	-	frwB	HEPCGN_12255	0.85	+0.3
1,195,260	-	frwB	HEPCGN_12255	0.85	-0.2
1,195,263	+	frwB	HEPCGN_12255	0.86	-0.1
1,195,264	-	frwB	HEPCGN_12255	0.86	+0.6
1,195,264	-	frwB	HEPCGN_12255	0.86	+0.4
1,195,280	-				+0.0
1,195,304	+				-0.3
1,195,315	-				-1.0
1,195,481	-	pflC	HEPCGN_12260	0.19	+0.6
1,195,516	+	pflC	HEPCGN_12260	0.23	-0.7
1,195,740	-	pflC	HEPCGN_12260	0.49	+0.2
1,196,230	+				-0.8
1,196,321	+				-0.3
1,196,322	-				+0.3
1,196,333	+				-1.0
1,196,333	+				+0.3
1,196,333	+				+0.5
1,196,445	-	pflD	HEPCGN_12265	0.13	-0.0
1,196,456	+	pflD	HEPCGN_12265	0.13	+2.9
1,196,606	-	pflD	HEPCGN_12265	0.20	-0.0
1,196,645	-	pflD	HEPCGN_12265	0.21	+0.6
1,196,666	-	pflD	HEPCGN_12265	0.22	-0.0
1,196,719	+	pflD	HEPCGN_12265	0.24	+0.4
1,196,719	+	pflD	HEPCGN_12265	0.24	-0.2
1,196,740	-	pflD	HEPCGN_12265	0.25	-0.2
1,196,788	-	pflD	HEPCGN_12265	0.27	+0.8
1,196,838	-	pflD	HEPCGN_12265	0.30	-0.1
1,196,903	+	pflD	HEPCGN_12265	0.32	-1.4
1,196,904	-	pflD	HEPCGN_12265	0.33	-0.2
1,196,906	-	pflD	HEPCGN_12265	0.33	-0.1
1,196,924	+	pflD	HEPCGN_12265	0.33	-0.4
1,197,011	+	pflD	HEPCGN_12265	0.37	+0.1
1,197,012	-	pflD	HEPCGN_12265	0.37	+0.2
1,197,012	-	pflD	HEPCGN_12265	0.37	+0.9
1,197,040	+	pflD	HEPCGN_12265	0.38	+0.0
1,197,041	-	pflD	HEPCGN_12265	0.38	-0.7
1,197,041	-	pflD	HEPCGN_12265	0.38	-0.1
1,197,041	-	pflD	HEPCGN_12265	0.38	+0.7
1,197,041	-	pflD	HEPCGN_12265	0.38	-0.7
1,197,041	-	pflD	HEPCGN_12265	0.38	+0.7
1,197,083	-	pflD	HEPCGN_12265	0.40	-0.5
1,197,083	-	pflD	HEPCGN_12265	0.40	+0.1
1,197,169	+	pflD	HEPCGN_12265	0.44	+1.7
1,197,185	+	pflD	HEPCGN_12265	0.45	+0.0
1,197,189	+	pflD	HEPCGN_12265	0.45	-1.0
1,197,189	+	pflD	HEPCGN_12265	0.45	+1.0