Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_09250 and tatD are separated by 216 nucleotides tatD and yjjU overlap by 4 nucleotides
HEPCGN_09250: HEPCGN_09250 - Putative glycyl-radical enzyme activating enzyme YjjW, at 597,717 to 598,421
_09250
HEPCGN_09265: tatD - metal-dependent hydrolase, at 598,638 to 599,417
tatD
HEPCGN_09270: yjjU - Uncharacterized protein YjjU, at 599,414 to 600,487
yjjU
Position (kb) 598
599
600 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 597.798 kb on - strand, within HEPCGN_09250 at 597.959 kb on + strand, within HEPCGN_09250 at 598.114 kb on + strand, within HEPCGN_09250 at 598.115 kb on - strand, within HEPCGN_09250 at 598.199 kb on - strand, within HEPCGN_09250 at 598.218 kb on + strand, within HEPCGN_09250 at 598.308 kb on + strand, within HEPCGN_09250 at 598.309 kb on - strand, within HEPCGN_09250 at 598.399 kb on + strand at 598.400 kb on - strand at 598.412 kb on - strand at 598.412 kb on - strand at 598.413 kb on + strand at 598.413 kb on + strand at 598.413 kb on + strand at 598.414 kb on - strand at 598.467 kb on + strand at 598.467 kb on + strand at 598.539 kb on + strand at 598.560 kb on - strand at 598.569 kb on - strand at 598.640 kb on - strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.660 kb on + strand at 598.661 kb on - strand at 598.668 kb on - strand at 598.670 kb on + strand at 598.670 kb on + strand at 598.710 kb on + strand at 598.710 kb on + strand at 598.787 kb on + strand, within tatD at 598.868 kb on - strand, within tatD at 598.874 kb on + strand, within tatD at 598.874 kb on + strand, within tatD at 598.982 kb on + strand, within tatD at 598.983 kb on - strand, within tatD at 599.073 kb on + strand, within tatD at 599.175 kb on + strand, within tatD at 599.176 kb on - strand, within tatD at 599.213 kb on + strand, within tatD at 599.213 kb on + strand, within tatD at 599.213 kb on + strand, within tatD at 599.213 kb on + strand, within tatD at 599.366 kb on + strand at 599.414 kb on + strand at 599.434 kb on + strand at 599.512 kb on + strand at 599.513 kb on - strand at 599.577 kb on - strand, within yjjU at 599.581 kb on + strand, within yjjU at 599.671 kb on + strand, within yjjU at 599.671 kb on + strand, within yjjU at 599.672 kb on - strand, within yjjU at 599.797 kb on + strand, within yjjU at 599.847 kb on + strand, within yjjU at 599.929 kb on + strand, within yjjU at 599.946 kb on + strand, within yjjU at 599.946 kb on + strand, within yjjU at 599.950 kb on + strand, within yjjU at 599.950 kb on + strand, within yjjU at 599.951 kb on - strand, within yjjU at 599.953 kb on + strand, within yjjU at 599.953 kb on + strand, within yjjU at 599.953 kb on + strand, within yjjU at 599.954 kb on - strand, within yjjU at 599.954 kb on - strand, within yjjU at 600.032 kb on - strand, within yjjU at 600.083 kb on - strand, within yjjU at 600.083 kb on - strand, within yjjU at 600.084 kb on + strand, within yjjU at 600.084 kb on + strand, within yjjU at 600.085 kb on - strand, within yjjU at 600.108 kb on - strand, within yjjU at 600.234 kb on + strand, within yjjU at 600.279 kb on + strand, within yjjU at 600.279 kb on + strand, within yjjU at 600.280 kb on - strand, within yjjU at 600.280 kb on - strand, within yjjU at 600.280 kb on - strand, within yjjU at 600.349 kb on + strand, within yjjU at 600.350 kb on - strand, within yjjU
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 597,798 - HEPCGN_09250 0.11 -0.9 597,959 + HEPCGN_09250 0.34 -1.5 598,114 + HEPCGN_09250 0.56 +0.8 598,115 - HEPCGN_09250 0.56 +0.0 598,199 - HEPCGN_09250 0.68 -0.6 598,218 + HEPCGN_09250 0.71 -0.3 598,308 + HEPCGN_09250 0.84 +0.0 598,309 - HEPCGN_09250 0.84 -1.6 598,399 + -0.3 598,400 - +0.4 598,412 - +1.1 598,412 - +0.1 598,413 + +0.6 598,413 + -0.5 598,413 + -0.2 598,414 - +0.5 598,467 + +0.5 598,467 + -0.3 598,539 + -0.0 598,560 - -0.0 598,569 - -0.5 598,640 - +0.5 598,660 + -2.3 598,660 + -0.9 598,660 + -0.3 598,660 + -0.6 598,660 + -0.1 598,660 + -0.4 598,661 - -0.2 598,668 - +1.4 598,670 + -0.6 598,670 + -0.3 598,710 + -0.1 598,710 + +0.5 598,787 + tatD HEPCGN_09265 0.19 -0.2 598,868 - tatD HEPCGN_09265 0.29 +0.1 598,874 + tatD HEPCGN_09265 0.30 -0.3 598,874 + tatD HEPCGN_09265 0.30 -1.0 598,982 + tatD HEPCGN_09265 0.44 +0.1 598,983 - tatD HEPCGN_09265 0.44 +0.1 599,073 + tatD HEPCGN_09265 0.56 -0.1 599,175 + tatD HEPCGN_09265 0.69 -0.7 599,176 - tatD HEPCGN_09265 0.69 -0.3 599,213 + tatD HEPCGN_09265 0.74 -0.0 599,213 + tatD HEPCGN_09265 0.74 -0.6 599,213 + tatD HEPCGN_09265 0.74 -0.3 599,213 + tatD HEPCGN_09265 0.74 -0.3 599,366 + -0.3 599,414 + -1.0 599,434 + +1.3 599,512 + -0.3 599,513 - +0.2 599,577 - yjjU HEPCGN_09270 0.15 +0.5 599,581 + yjjU HEPCGN_09270 0.16 +3.7 599,671 + yjjU HEPCGN_09270 0.24 +0.1 599,671 + yjjU HEPCGN_09270 0.24 -1.4 599,672 - yjjU HEPCGN_09270 0.24 +0.1 599,797 + yjjU HEPCGN_09270 0.36 +0.2 599,847 + yjjU HEPCGN_09270 0.40 -0.3 599,929 + yjjU HEPCGN_09270 0.48 -0.2 599,946 + yjjU HEPCGN_09270 0.50 -0.1 599,946 + yjjU HEPCGN_09270 0.50 +1.3 599,950 + yjjU HEPCGN_09270 0.50 +0.2 599,950 + yjjU HEPCGN_09270 0.50 -0.1 599,951 - yjjU HEPCGN_09270 0.50 +0.6 599,953 + yjjU HEPCGN_09270 0.50 +2.1 599,953 + yjjU HEPCGN_09270 0.50 +0.3 599,953 + yjjU HEPCGN_09270 0.50 +0.8 599,954 - yjjU HEPCGN_09270 0.50 -0.6 599,954 - yjjU HEPCGN_09270 0.50 -0.5 600,032 - yjjU HEPCGN_09270 0.58 -0.0 600,083 - yjjU HEPCGN_09270 0.62 -0.8 600,083 - yjjU HEPCGN_09270 0.62 +0.8 600,084 + yjjU HEPCGN_09270 0.62 +0.1 600,084 + yjjU HEPCGN_09270 0.62 -2.1 600,085 - yjjU HEPCGN_09270 0.62 +1.3 600,108 - yjjU HEPCGN_09270 0.65 +0.3 600,234 + yjjU HEPCGN_09270 0.76 -0.1 600,279 + yjjU HEPCGN_09270 0.81 -0.3 600,279 + yjjU HEPCGN_09270 0.81 -0.1 600,280 - yjjU HEPCGN_09270 0.81 +1.7 600,280 - yjjU HEPCGN_09270 0.81 +0.3 600,280 - yjjU HEPCGN_09270 0.81 -0.3 600,349 + yjjU HEPCGN_09270 0.87 -0.3 600,350 - yjjU HEPCGN_09270 0.87 +0.0
Or see this region's nucleotide sequence