Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frsA and fadH are separated by 244 nucleotides fadH and HEPCGN_07700 are separated by 229 nucleotides HEPCGN_07700 and ykgR are separated by 124 nucleotides ykgR and rpmE2-1 are separated by 361 nucleotides
HEPCGN_07690: frsA - alpha/beta hydrolase, at 283,324 to 284,244
frsA
HEPCGN_07695: fadH - NADH:flavin oxidoreductase, at 284,489 to 285,631
fadH
HEPCGN_07700: HEPCGN_07700 - hypothetical protein, at 285,861 to 285,980
_07700
HEPCGN_07705: ykgR - Uncharacterized membrane protein YkgR, at 286,105 to 286,206
ykgR
HEPCGN_07710: rpmE2-1 - type B 50S ribosomal protein L31, at 286,568 to 286,834
rpmE2-1
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 283.501 kb on - strand, within frsA at 283.614 kb on + strand, within frsA at 283.615 kb on - strand, within frsA at 283.624 kb on + strand, within frsA at 283.625 kb on - strand, within frsA at 283.676 kb on - strand, within frsA at 283.741 kb on + strand, within frsA at 283.827 kb on + strand, within frsA at 283.904 kb on + strand, within frsA at 284.590 kb on + strand at 284.819 kb on - strand, within fadH at 284.907 kb on + strand, within fadH at 285.186 kb on + strand, within fadH at 285.235 kb on + strand, within fadH at 285.274 kb on + strand, within fadH at 285.277 kb on - strand, within fadH at 285.277 kb on - strand, within fadH at 285.277 kb on - strand, within fadH at 285.281 kb on - strand, within fadH at 285.400 kb on - strand, within fadH at 285.475 kb on - strand, within fadH at 285.756 kb on + strand at 285.756 kb on + strand at 285.757 kb on - strand at 285.757 kb on - strand at 285.757 kb on - strand at 285.764 kb on + strand at 285.765 kb on - strand at 285.778 kb on - strand at 285.835 kb on + strand at 285.836 kb on - strand at 285.861 kb on - strand at 285.957 kb on - strand, within HEPCGN_07700 at 285.957 kb on - strand, within HEPCGN_07700 at 286.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 283,501 - frsA HEPCGN_07690 0.19 +0.5 283,614 + frsA HEPCGN_07690 0.31 -1.0 283,615 - frsA HEPCGN_07690 0.32 +0.8 283,624 + frsA HEPCGN_07690 0.33 -0.3 283,625 - frsA HEPCGN_07690 0.33 -1.2 283,676 - frsA HEPCGN_07690 0.38 -0.2 283,741 + frsA HEPCGN_07690 0.45 +0.4 283,827 + frsA HEPCGN_07690 0.55 -0.1 283,904 + frsA HEPCGN_07690 0.63 -0.3 284,590 + -0.3 284,819 - fadH HEPCGN_07695 0.29 -1.2 284,907 + fadH HEPCGN_07695 0.37 -2.5 285,186 + fadH HEPCGN_07695 0.61 -1.0 285,235 + fadH HEPCGN_07695 0.65 +0.2 285,274 + fadH HEPCGN_07695 0.69 +0.3 285,277 - fadH HEPCGN_07695 0.69 +0.4 285,277 - fadH HEPCGN_07695 0.69 +2.0 285,277 - fadH HEPCGN_07695 0.69 -0.3 285,281 - fadH HEPCGN_07695 0.69 -0.5 285,400 - fadH HEPCGN_07695 0.80 -0.1 285,475 - fadH HEPCGN_07695 0.86 +0.4 285,756 + -0.1 285,756 + -0.2 285,757 - -0.1 285,757 - +0.0 285,757 - -0.2 285,764 + -1.2 285,765 - -0.3 285,778 - -0.5 285,835 + +0.1 285,836 - +0.1 285,861 - -0.3 285,957 - HEPCGN_07700 0.80 +0.1 285,957 - HEPCGN_07700 0.80 -0.3 286,050 + +0.1
Or see this region's nucleotide sequence