Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmE and chbB are separated by 298 nucleotides chbB and chbC are separated by 84 nucleotides chbC and chbA are separated by 50 nucleotides chbA and chbR are separated by 10 nucleotides
HEPCGN_05320: osmE - osmotically-inducible lipoprotein OsmE, at 939,555 to 939,893
osmE
HEPCGN_05325: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 940,192 to 940,512
chbB
HEPCGN_05330: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 940,597 to 941,955
chbC
HEPCGN_05335: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 942,006 to 942,356
chbA
HEPCGN_05340: chbR - transcriptional regulator ChbR, at 942,367 to 943,206
chbR
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1
2
3 at 939.599 kb on - strand, within osmE at 939.617 kb on + strand, within osmE at 939.618 kb on - strand, within osmE at 939.624 kb on + strand, within osmE at 939.649 kb on + strand, within osmE at 939.752 kb on + strand, within osmE at 939.752 kb on + strand, within osmE at 939.788 kb on + strand, within osmE at 939.789 kb on - strand, within osmE at 939.917 kb on + strand at 939.917 kb on + strand at 939.965 kb on - strand at 939.968 kb on + strand at 940.053 kb on + strand at 940.067 kb on - strand at 940.067 kb on - strand at 940.074 kb on - strand at 940.076 kb on - strand at 940.119 kb on - strand at 940.164 kb on - strand at 940.170 kb on - strand at 940.170 kb on - strand at 940.210 kb on + strand at 940.245 kb on - strand, within chbB at 940.376 kb on - strand, within chbB at 940.377 kb on + strand, within chbB at 940.378 kb on - strand, within chbB at 940.378 kb on - strand, within chbB at 940.972 kb on - strand, within chbC at 941.040 kb on + strand, within chbC at 941.220 kb on + strand, within chbC at 941.256 kb on + strand, within chbC at 941.305 kb on + strand, within chbC at 941.529 kb on - strand, within chbC at 941.726 kb on - strand, within chbC at 941.736 kb on + strand, within chbC at 942.006 kb on - strand at 942.077 kb on + strand, within chbA at 942.077 kb on + strand, within chbA at 942.077 kb on + strand, within chbA at 942.242 kb on + strand, within chbA at 942.287 kb on - strand, within chbA at 942.325 kb on + strand at 942.527 kb on - strand, within chbR at 942.654 kb on + strand, within chbR at 942.716 kb on + strand, within chbR at 942.872 kb on + strand, within chbR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 939,599 - osmE HEPCGN_05320 0.13 -0.1 939,617 + osmE HEPCGN_05320 0.18 -0.1 939,618 - osmE HEPCGN_05320 0.19 +0.3 939,624 + osmE HEPCGN_05320 0.20 -0.1 939,649 + osmE HEPCGN_05320 0.28 -0.1 939,752 + osmE HEPCGN_05320 0.58 +0.1 939,752 + osmE HEPCGN_05320 0.58 +0.8 939,788 + osmE HEPCGN_05320 0.69 -0.0 939,789 - osmE HEPCGN_05320 0.69 +0.4 939,917 + -1.7 939,917 + +1.1 939,965 - -0.9 939,968 + -0.8 940,053 + -0.2 940,067 - -0.7 940,067 - +1.4 940,074 - -0.6 940,076 - -0.0 940,119 - -0.0 940,164 - +0.3 940,170 - +3.0 940,170 - -0.6 940,210 + +0.6 940,245 - chbB HEPCGN_05325 0.17 +1.9 940,376 - chbB HEPCGN_05325 0.57 +1.3 940,377 + chbB HEPCGN_05325 0.58 +0.2 940,378 - chbB HEPCGN_05325 0.58 +0.7 940,378 - chbB HEPCGN_05325 0.58 -0.4 940,972 - chbC HEPCGN_05330 0.28 -0.4 941,040 + chbC HEPCGN_05330 0.33 -0.7 941,220 + chbC HEPCGN_05330 0.46 -0.1 941,256 + chbC HEPCGN_05330 0.48 +0.4 941,305 + chbC HEPCGN_05330 0.52 -0.3 941,529 - chbC HEPCGN_05330 0.69 -0.0 941,726 - chbC HEPCGN_05330 0.83 -0.0 941,736 + chbC HEPCGN_05330 0.84 +0.4 942,006 - -0.4 942,077 + chbA HEPCGN_05335 0.20 +0.4 942,077 + chbA HEPCGN_05335 0.20 -1.6 942,077 + chbA HEPCGN_05335 0.20 +0.3 942,242 + chbA HEPCGN_05335 0.67 -0.6 942,287 - chbA HEPCGN_05335 0.80 +1.4 942,325 + +0.5 942,527 - chbR HEPCGN_05340 0.19 -0.1 942,654 + chbR HEPCGN_05340 0.34 -0.1 942,716 + chbR HEPCGN_05340 0.42 -0.7 942,872 + chbR HEPCGN_05340 0.60 -0.9
Or see this region's nucleotide sequence