Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoaA and tsaB are separated by 57 nucleotides tsaB and yeaY are separated by 38 nucleotides yeaY and fadD are separated by 138 nucleotides
HEPCGN_04970: yoaA - putative ATP-dependent DNA helicase YoaA, at 869,568 to 871,478
yoaA
HEPCGN_04975: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 871,536 to 872,231
tsaB
HEPCGN_04980: yeaY - Slp family lipoprotein YeaY, at 872,270 to 872,851
yeaY
HEPCGN_04985: fadD - long-chain-fatty-acid--CoA ligase FadD, at 872,990 to 874,741
fadD
Position (kb) 872
873 Strain fitness (log2 ratio) -1
0
1
2 at 871.271 kb on - strand, within yoaA at 871.271 kb on - strand, within yoaA at 871.292 kb on + strand at 871.292 kb on + strand at 871.292 kb on + strand at 871.293 kb on - strand at 871.293 kb on - strand at 871.476 kb on + strand at 871.476 kb on + strand at 871.491 kb on + strand at 871.496 kb on + strand at 872.185 kb on - strand at 872.188 kb on + strand at 872.189 kb on - strand at 872.193 kb on - strand at 872.237 kb on - strand at 872.237 kb on - strand at 872.242 kb on + strand at 872.301 kb on + strand at 872.391 kb on + strand, within yeaY at 872.420 kb on + strand, within yeaY at 872.561 kb on + strand, within yeaY at 872.669 kb on + strand, within yeaY at 872.669 kb on + strand, within yeaY at 872.670 kb on - strand, within yeaY at 872.672 kb on - strand, within yeaY at 872.677 kb on + strand, within yeaY at 872.715 kb on + strand, within yeaY at 872.807 kb on + strand at 872.807 kb on + strand at 872.906 kb on + strand at 872.963 kb on - strand at 873.073 kb on + strand at 873.136 kb on + strand at 873.136 kb on + strand at 873.137 kb on - strand at 873.137 kb on - strand at 873.137 kb on - strand at 873.188 kb on - strand, within fadD at 873.245 kb on + strand, within fadD at 873.245 kb on + strand, within fadD at 873.306 kb on + strand, within fadD at 873.361 kb on - strand, within fadD at 873.377 kb on + strand, within fadD at 873.476 kb on - strand, within fadD at 873.497 kb on - strand, within fadD at 873.523 kb on - strand, within fadD at 873.526 kb on + strand, within fadD at 873.527 kb on - strand, within fadD at 873.587 kb on + strand, within fadD at 873.587 kb on + strand, within fadD at 873.588 kb on - strand, within fadD at 873.679 kb on - strand, within fadD at 873.692 kb on + strand, within fadD at 873.692 kb on + strand, within fadD at 873.746 kb on - strand, within fadD at 873.833 kb on + strand, within fadD at 873.834 kb on - strand, within fadD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 871,271 - yoaA HEPCGN_04970 0.89 +0.6 871,271 - yoaA HEPCGN_04970 0.89 -0.7 871,292 + -0.4 871,292 + +0.1 871,292 + -0.7 871,293 - +0.0 871,293 - +0.8 871,476 + +0.3 871,476 + +0.5 871,491 + -1.3 871,496 + +2.1 872,185 - +2.5 872,188 + -0.5 872,189 - -0.1 872,193 - +0.2 872,237 - +0.1 872,237 - +2.5 872,242 + -1.0 872,301 + -0.3 872,391 + yeaY HEPCGN_04980 0.21 +1.9 872,420 + yeaY HEPCGN_04980 0.26 +0.8 872,561 + yeaY HEPCGN_04980 0.50 +0.1 872,669 + yeaY HEPCGN_04980 0.69 +0.0 872,669 + yeaY HEPCGN_04980 0.69 +0.8 872,670 - yeaY HEPCGN_04980 0.69 +0.8 872,672 - yeaY HEPCGN_04980 0.69 +0.6 872,677 + yeaY HEPCGN_04980 0.70 -0.5 872,715 + yeaY HEPCGN_04980 0.76 +0.7 872,807 + -0.7 872,807 + -0.5 872,906 + +0.1 872,963 - -0.2 873,073 + -1.5 873,136 + -1.2 873,136 + +2.0 873,137 - +0.5 873,137 - -1.0 873,137 - +0.3 873,188 - fadD HEPCGN_04985 0.11 +0.4 873,245 + fadD HEPCGN_04985 0.15 +2.1 873,245 + fadD HEPCGN_04985 0.15 -0.0 873,306 + fadD HEPCGN_04985 0.18 -0.1 873,361 - fadD HEPCGN_04985 0.21 -1.1 873,377 + fadD HEPCGN_04985 0.22 +0.1 873,476 - fadD HEPCGN_04985 0.28 +1.2 873,497 - fadD HEPCGN_04985 0.29 +1.5 873,523 - fadD HEPCGN_04985 0.30 -0.3 873,526 + fadD HEPCGN_04985 0.31 +0.5 873,527 - fadD HEPCGN_04985 0.31 +1.1 873,587 + fadD HEPCGN_04985 0.34 +0.9 873,587 + fadD HEPCGN_04985 0.34 -1.7 873,588 - fadD HEPCGN_04985 0.34 -1.1 873,679 - fadD HEPCGN_04985 0.39 +0.7 873,692 + fadD HEPCGN_04985 0.40 -0.1 873,692 + fadD HEPCGN_04985 0.40 +0.8 873,746 - fadD HEPCGN_04985 0.43 -0.3 873,833 + fadD HEPCGN_04985 0.48 +1.5 873,834 - fadD HEPCGN_04985 0.48 -0.6
Or see this region's nucleotide sequence