Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zinT and msrQ are separated by 257 nucleotides msrQ and msrP are separated by 0 nucleotides msrP and hiuH are separated by 108 nucleotides hiuH and hprR are separated by 21 nucleotides
HEPCGN_03905: zinT - metal-binding protein ZinT, at 687,458 to 688,108
zinT
HEPCGN_03910: msrQ - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 688,366 to 689,001
msrQ
HEPCGN_03915: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 689,002 to 690,006
msrP
HEPCGN_03920: hiuH - hydroxyisourate hydrolase, at 690,115 to 690,528
hiuH
HEPCGN_03925: hprR - response regulator transcription factor HprR, at 690,550 to 691,332
hprR
Position (kb) 689
690
691 Strain fitness (log2 ratio) -1
0
1 at 688.094 kb on - strand at 688.127 kb on + strand at 688.128 kb on - strand at 688.203 kb on - strand at 688.203 kb on - strand at 688.436 kb on - strand, within msrQ at 688.466 kb on + strand, within msrQ at 688.648 kb on + strand, within msrQ at 688.666 kb on + strand, within msrQ at 688.678 kb on + strand, within msrQ at 688.679 kb on - strand, within msrQ at 688.682 kb on - strand, within msrQ at 688.756 kb on + strand, within msrQ at 688.822 kb on + strand, within msrQ at 689.239 kb on - strand, within msrP at 689.239 kb on - strand, within msrP at 689.242 kb on - strand, within msrP at 689.342 kb on - strand, within msrP at 689.342 kb on - strand, within msrP at 689.403 kb on - strand, within msrP at 689.403 kb on - strand, within msrP at 689.403 kb on - strand, within msrP at 689.459 kb on + strand, within msrP at 689.480 kb on + strand, within msrP at 689.481 kb on - strand, within msrP at 689.577 kb on + strand, within msrP at 689.583 kb on - strand, within msrP at 689.586 kb on + strand, within msrP at 689.929 kb on + strand at 689.929 kb on + strand at 689.971 kb on - strand at 690.110 kb on - strand at 690.110 kb on - strand at 690.171 kb on - strand, within hiuH at 690.171 kb on - strand, within hiuH at 690.265 kb on + strand, within hiuH at 690.508 kb on + strand at 690.511 kb on + strand at 690.535 kb on - strand at 690.590 kb on + strand at 690.590 kb on + strand at 690.591 kb on - strand at 690.638 kb on - strand, within hprR at 690.638 kb on - strand, within hprR at 690.813 kb on + strand, within hprR at 690.892 kb on - strand, within hprR at 691.004 kb on + strand, within hprR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 688,094 - +0.6 688,127 + -1.0 688,128 - -0.6 688,203 - +0.1 688,203 - -1.0 688,436 - msrQ HEPCGN_03910 0.11 +0.1 688,466 + msrQ HEPCGN_03910 0.16 -0.3 688,648 + msrQ HEPCGN_03910 0.44 +0.5 688,666 + msrQ HEPCGN_03910 0.47 -1.2 688,678 + msrQ HEPCGN_03910 0.49 +0.4 688,679 - msrQ HEPCGN_03910 0.49 -0.4 688,682 - msrQ HEPCGN_03910 0.50 -0.5 688,756 + msrQ HEPCGN_03910 0.61 -0.3 688,822 + msrQ HEPCGN_03910 0.72 -0.5 689,239 - msrP HEPCGN_03915 0.24 +1.0 689,239 - msrP HEPCGN_03915 0.24 -0.5 689,242 - msrP HEPCGN_03915 0.24 -0.3 689,342 - msrP HEPCGN_03915 0.34 -0.7 689,342 - msrP HEPCGN_03915 0.34 +0.9 689,403 - msrP HEPCGN_03915 0.40 +0.7 689,403 - msrP HEPCGN_03915 0.40 +0.1 689,403 - msrP HEPCGN_03915 0.40 -0.6 689,459 + msrP HEPCGN_03915 0.45 +0.5 689,480 + msrP HEPCGN_03915 0.48 +1.5 689,481 - msrP HEPCGN_03915 0.48 -1.1 689,577 + msrP HEPCGN_03915 0.57 -0.0 689,583 - msrP HEPCGN_03915 0.58 -0.7 689,586 + msrP HEPCGN_03915 0.58 +0.5 689,929 + -0.0 689,929 + -0.5 689,971 - +0.5 690,110 - +1.1 690,110 - +0.3 690,171 - hiuH HEPCGN_03920 0.14 -0.4 690,171 - hiuH HEPCGN_03920 0.14 +0.5 690,265 + hiuH HEPCGN_03920 0.36 -0.1 690,508 + +0.3 690,511 + -0.3 690,535 - -0.0 690,590 + -0.3 690,590 + -0.1 690,591 - -0.8 690,638 - hprR HEPCGN_03925 0.11 -1.0 690,638 - hprR HEPCGN_03925 0.11 -0.5 690,813 + hprR HEPCGN_03925 0.34 -0.5 690,892 - hprR HEPCGN_03925 0.44 +0.2 691,004 + hprR HEPCGN_03925 0.58 +0.3
Or see this region's nucleotide sequence