Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03635 and dicB overlap by 4 nucleotides dicB and ydfC are separated by 567 nucleotides ydfC and HEPCGN_03655 are separated by 92 nucleotides HEPCGN_03655 and HEPCGN_03660 are separated by 306 nucleotides
HEPCGN_03635: HEPCGN_03635 - DUF1482 domain-containing protein, at 650,055 to 650,246
_03635
HEPCGN_03640: dicB - cell division inhibition protein DicB, at 650,243 to 650,431
dicB
HEPCGN_03650: ydfC - Uncharacterized protein YdfC, at 650,999 to 651,217
ydfC
HEPCGN_03655: HEPCGN_03655 - hypothetical protein, at 651,310 to 651,510
_03655
HEPCGN_03660: HEPCGN_03660 - transcriptional regulator, at 651,817 to 652,224
_03660
Position (kb) 650
651
652 Strain fitness (log2 ratio) -1
0
1 at 650.020 kb on + strand at 650.187 kb on - strand, within HEPCGN_03635 at 650.755 kb on - strand at 650.830 kb on + strand at 650.841 kb on + strand at 650.841 kb on + strand at 650.842 kb on - strand at 650.887 kb on + strand at 651.013 kb on + strand at 651.014 kb on - strand at 651.062 kb on - strand, within ydfC at 651.163 kb on - strand, within ydfC at 651.179 kb on - strand, within ydfC at 651.251 kb on - strand at 651.272 kb on - strand at 651.272 kb on - strand at 651.428 kb on + strand, within HEPCGN_03655 at 651.428 kb on + strand, within HEPCGN_03655 at 651.474 kb on + strand, within HEPCGN_03655 at 651.508 kb on + strand at 651.508 kb on + strand at 651.525 kb on + strand at 651.526 kb on - strand at 651.547 kb on + strand at 651.571 kb on - strand at 651.576 kb on + strand at 651.577 kb on - strand at 651.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 650,020 + -0.7 650,187 - HEPCGN_03635 0.69 -0.9 650,755 - -0.2 650,830 + -1.2 650,841 + +0.2 650,841 + +0.5 650,842 - +0.1 650,887 + -0.7 651,013 + +0.8 651,014 - +0.9 651,062 - ydfC HEPCGN_03650 0.29 +0.6 651,163 - ydfC HEPCGN_03650 0.75 +0.7 651,179 - ydfC HEPCGN_03650 0.82 +0.9 651,251 - +0.3 651,272 - -0.0 651,272 - +1.0 651,428 + HEPCGN_03655 0.59 -0.3 651,428 + HEPCGN_03655 0.59 +0.2 651,474 + HEPCGN_03655 0.82 -0.1 651,508 + -1.2 651,508 + +0.4 651,525 + +0.2 651,526 - -0.2 651,547 + +0.3 651,571 - +0.1 651,576 + +0.4 651,577 - -0.0 651,578 + -1.7
Or see this region's nucleotide sequence