Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_02610 and HEPCGN_02615 overlap by 4 nucleotides HEPCGN_02615 and HEPCGN_02620 are separated by 9 nucleotides HEPCGN_02620 and HEPCGN_02625 are separated by 117 nucleotides HEPCGN_02625 and HEPCGN_02630 are separated by 213 nucleotides HEPCGN_02630 and btsS are separated by 221 nucleotides
HEPCGN_02610: HEPCGN_02610 - phage tail protein, at 424,362 to 426,422
_02610
HEPCGN_02615: HEPCGN_02615 - hypothetical protein, at 426,419 to 426,697
_02615
HEPCGN_02620: HEPCGN_02620 - Ybl63, at 426,707 to 427,003
_02620
HEPCGN_02625: HEPCGN_02625 - damage-inducible protein DinI, at 427,121 to 427,369
_02625
HEPCGN_02630: HEPCGN_02630 - IS4 family transposase, at 427,583 to 427,651
_02630
HEPCGN_02635: btsS - two-component regulatory system sensor histidine kinase BtsS, at 427,873 to 429,558
btsS
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1 at 426.017 kb on + strand, within HEPCGN_02610 at 426.017 kb on + strand, within HEPCGN_02610 at 426.138 kb on + strand, within HEPCGN_02610 at 426.231 kb on - strand at 426.242 kb on - strand at 426.254 kb on + strand at 426.256 kb on + strand at 426.286 kb on - strand at 426.288 kb on - strand at 426.744 kb on + strand, within HEPCGN_02620 at 426.745 kb on - strand, within HEPCGN_02620 at 426.809 kb on - strand, within HEPCGN_02620 at 427.068 kb on - strand at 427.273 kb on + strand, within HEPCGN_02625 at 427.273 kb on + strand, within HEPCGN_02625 at 427.274 kb on - strand, within HEPCGN_02625 at 427.351 kb on + strand at 427.393 kb on - strand at 427.444 kb on - strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.461 kb on + strand at 427.462 kb on - strand at 427.462 kb on - strand at 427.737 kb on - strand at 427.779 kb on - strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.835 kb on + strand at 427.836 kb on - strand at 427.836 kb on - strand at 427.876 kb on + strand at 427.877 kb on - strand at 427.947 kb on + strand at 427.947 kb on + strand at 427.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 426,017 + HEPCGN_02610 0.80 -0.5 426,017 + HEPCGN_02610 0.80 +0.2 426,138 + HEPCGN_02610 0.86 -0.5 426,231 - -0.5 426,242 - -0.7 426,254 + -0.2 426,256 + -0.4 426,286 - -0.3 426,288 - +0.6 426,744 + HEPCGN_02620 0.12 +0.6 426,745 - HEPCGN_02620 0.13 -1.2 426,809 - HEPCGN_02620 0.34 -0.7 427,068 - -0.9 427,273 + HEPCGN_02625 0.61 +1.0 427,273 + HEPCGN_02625 0.61 +0.5 427,274 - HEPCGN_02625 0.61 +1.0 427,351 + -0.1 427,393 - -0.3 427,444 - -0.1 427,461 + -0.8 427,461 + -0.7 427,461 + -1.1 427,461 + +1.3 427,461 + -2.1 427,461 + +0.0 427,462 - +0.3 427,462 - -0.5 427,737 - +0.1 427,779 - +0.1 427,835 + -0.1 427,835 + +1.1 427,835 + -0.4 427,835 + -1.6 427,836 - -0.2 427,836 - +0.7 427,876 + -0.7 427,877 - +0.4 427,947 + +0.3 427,947 + +0.4 427,959 - -0.2
Or see this region's nucleotide sequence