Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepE and fepC overlap by 4 nucleotides fepC and fepG overlap by 4 nucleotides fepG and fepD overlap by 4 nucleotides
HEPCGN_00675: fepE - LPS O-antigen length regulator, at 63,565 to 64,698
fepE
HEPCGN_00680: fepC - ferrienterobactin ABC transporter ATPase, at 64,695 to 65,510
fepC
HEPCGN_00685: fepG - iron-enterobactin ABC transporter permease, at 65,507 to 66,499
fepG
HEPCGN_00690: fepD - ferrienterobactin ABC transporter permease, at 66,496 to 67,500
fepD
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.584 kb on + strand, within fepE at 64.585 kb on - strand at 64.696 kb on + strand at 64.925 kb on + strand, within fepC at 64.927 kb on + strand, within fepC at 64.927 kb on + strand, within fepC at 64.985 kb on + strand, within fepC at 65.018 kb on + strand, within fepC at 65.290 kb on + strand, within fepC at 65.376 kb on - strand, within fepC at 65.428 kb on - strand, within fepC at 65.450 kb on + strand at 65.452 kb on + strand at 65.452 kb on + strand at 65.453 kb on - strand at 65.453 kb on - strand at 65.453 kb on - strand at 65.473 kb on - strand at 65.531 kb on + strand at 65.532 kb on - strand at 65.547 kb on + strand at 65.548 kb on - strand at 65.726 kb on - strand, within fepG at 65.900 kb on - strand, within fepG at 65.900 kb on - strand, within fepG at 65.900 kb on - strand, within fepG at 65.900 kb on - strand, within fepG at 66.017 kb on - strand, within fepG at 66.222 kb on - strand, within fepG at 66.245 kb on - strand, within fepG at 66.297 kb on - strand, within fepG at 66.420 kb on - strand at 66.430 kb on + strand at 66.455 kb on + strand at 66.455 kb on + strand at 66.476 kb on + strand at 66.477 kb on - strand at 66.493 kb on - strand at 66.493 kb on - strand at 66.493 kb on - strand at 66.643 kb on + strand, within fepD at 66.680 kb on - strand, within fepD at 66.736 kb on + strand, within fepD at 66.918 kb on + strand, within fepD at 66.922 kb on + strand, within fepD at 66.922 kb on + strand, within fepD at 66.922 kb on + strand, within fepD at 66.922 kb on + strand, within fepD at 66.922 kb on + strand, within fepD at 66.923 kb on - strand, within fepD at 66.971 kb on + strand, within fepD at 66.971 kb on + strand, within fepD at 66.972 kb on - strand, within fepD at 67.112 kb on - strand, within fepD at 67.423 kb on + strand at 67.423 kb on + strand at 67.424 kb on - strand at 67.444 kb on + strand at 67.445 kb on - strand at 67.445 kb on - strand at 67.447 kb on + strand at 67.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 64,584 + fepE HEPCGN_00675 0.90 -0.6 64,585 - -0.5 64,696 + -0.2 64,925 + fepC HEPCGN_00680 0.28 +1.3 64,927 + fepC HEPCGN_00680 0.28 -0.1 64,927 + fepC HEPCGN_00680 0.28 -1.3 64,985 + fepC HEPCGN_00680 0.36 -0.5 65,018 + fepC HEPCGN_00680 0.40 +1.3 65,290 + fepC HEPCGN_00680 0.73 -0.7 65,376 - fepC HEPCGN_00680 0.83 +0.3 65,428 - fepC HEPCGN_00680 0.90 -0.7 65,450 + -1.2 65,452 + -0.8 65,452 + +0.8 65,453 - -1.8 65,453 - -0.7 65,453 - -2.4 65,473 - -1.8 65,531 + +0.8 65,532 - -0.2 65,547 + -2.8 65,548 - -0.6 65,726 - fepG HEPCGN_00685 0.22 +0.3 65,900 - fepG HEPCGN_00685 0.40 -0.4 65,900 - fepG HEPCGN_00685 0.40 -0.8 65,900 - fepG HEPCGN_00685 0.40 +0.1 65,900 - fepG HEPCGN_00685 0.40 -0.8 66,017 - fepG HEPCGN_00685 0.51 -1.2 66,222 - fepG HEPCGN_00685 0.72 -1.0 66,245 - fepG HEPCGN_00685 0.74 +0.5 66,297 - fepG HEPCGN_00685 0.80 +0.1 66,420 - -1.1 66,430 + -1.6 66,455 + +1.3 66,455 + +1.3 66,476 + -1.9 66,477 - +0.4 66,493 - -0.8 66,493 - -0.5 66,493 - +0.2 66,643 + fepD HEPCGN_00690 0.15 +0.1 66,680 - fepD HEPCGN_00690 0.18 +0.8 66,736 + fepD HEPCGN_00690 0.24 +0.5 66,918 + fepD HEPCGN_00690 0.42 +0.4 66,922 + fepD HEPCGN_00690 0.42 -0.2 66,922 + fepD HEPCGN_00690 0.42 -0.4 66,922 + fepD HEPCGN_00690 0.42 +1.2 66,922 + fepD HEPCGN_00690 0.42 +0.8 66,922 + fepD HEPCGN_00690 0.42 -0.1 66,923 - fepD HEPCGN_00690 0.42 -0.4 66,971 + fepD HEPCGN_00690 0.47 +1.2 66,971 + fepD HEPCGN_00690 0.47 +0.8 66,972 - fepD HEPCGN_00690 0.47 -0.4 67,112 - fepD HEPCGN_00690 0.61 +1.5 67,423 + -0.7 67,423 + +1.8 67,424 - -0.4 67,444 + -1.0 67,445 - +0.1 67,445 - +1.2 67,447 + +0.2 67,448 - -0.3
Or see this region's nucleotide sequence