Experiment: beta-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS18905 and ABI39_RS18910 are separated by 13 nucleotides ABI39_RS18910 and ABI39_RS18915 are separated by 56 nucleotides ABI39_RS18915 and ABI39_RS18920 are separated by 195 nucleotides ABI39_RS18920 and ABI39_RS18925 are separated by 180 nucleotides
ABI39_RS18905: ABI39_RS18905 - YbbR-like domain-containing protein, at 4,763,183 to 4,764,196
_RS18905
ABI39_RS18910: ABI39_RS18910 - preprotein translocase subunit YajC, at 4,764,210 to 4,764,524
_RS18910
ABI39_RS18915: ABI39_RS18915 - transcription antitermination factor NusB, at 4,764,581 to 4,765,507
_RS18915
ABI39_RS18920: ABI39_RS18920 - PUR family DNA/RNA-binding protein, at 4,765,703 to 4,766,086
_RS18920
ABI39_RS18925: ABI39_RS18925 - 50S ribosomal protein L25/general stress protein Ctc, at 4,766,267 to 4,766,863
_RS18925
Position (kb) 4764
4765
4766 Strain fitness (log2 ratio) -1
0
1 at 4763.597 kb on - strand, within ABI39_RS18905 at 4763.915 kb on - strand, within ABI39_RS18905 at 4763.917 kb on - strand, within ABI39_RS18905 at 4764.000 kb on - strand, within ABI39_RS18905 at 4764.081 kb on - strand, within ABI39_RS18905 at 4764.081 kb on - strand, within ABI39_RS18905 at 4764.173 kb on - strand at 4764.270 kb on - strand, within ABI39_RS18910 at 4764.339 kb on - strand, within ABI39_RS18910 at 4764.441 kb on - strand, within ABI39_RS18910 at 4764.580 kb on - strand at 4764.580 kb on - strand at 4765.698 kb on - strand at 4765.698 kb on - strand at 4765.713 kb on - strand at 4765.783 kb on + strand, within ABI39_RS18920 at 4765.784 kb on - strand, within ABI39_RS18920 at 4765.794 kb on + strand, within ABI39_RS18920 at 4765.795 kb on - strand, within ABI39_RS18920 at 4765.915 kb on + strand, within ABI39_RS18920 at 4765.960 kb on - strand, within ABI39_RS18920 at 4765.966 kb on + strand, within ABI39_RS18920 at 4766.070 kb on + strand at 4766.070 kb on + strand at 4766.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin (C) remove 4,763,597 - ABI39_RS18905 0.41 -0.2 4,763,915 - ABI39_RS18905 0.72 +0.8 4,763,917 - ABI39_RS18905 0.72 -0.0 4,764,000 - ABI39_RS18905 0.81 -0.2 4,764,081 - ABI39_RS18905 0.89 +0.3 4,764,081 - ABI39_RS18905 0.89 +0.5 4,764,173 - +0.6 4,764,270 - ABI39_RS18910 0.19 -0.9 4,764,339 - ABI39_RS18910 0.41 -0.3 4,764,441 - ABI39_RS18910 0.73 -1.0 4,764,580 - -1.6 4,764,580 - -0.0 4,765,698 - +0.9 4,765,698 - +0.2 4,765,713 - +0.7 4,765,783 + ABI39_RS18920 0.21 -0.3 4,765,784 - ABI39_RS18920 0.21 +1.0 4,765,794 + ABI39_RS18920 0.24 +0.8 4,765,795 - ABI39_RS18920 0.24 +0.2 4,765,915 + ABI39_RS18920 0.55 +0.8 4,765,960 - ABI39_RS18920 0.67 +1.0 4,765,966 + ABI39_RS18920 0.68 +0.1 4,766,070 + +0.6 4,766,070 + +0.8 4,766,074 + +0.5
Or see this region's nucleotide sequence