Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13400

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntqueF and OKGIIK_13400 are separated by 188 nucleotidesOKGIIK_13400 and OKGIIK_13405 overlap by 30 nucleotidesOKGIIK_13405 and OKGIIK_13410 are separated by 47 nucleotides OKGIIK_13395: queF - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 2,893,751 to 2,894,575 queF OKGIIK_13400: OKGIIK_13400 - hypothetical protein, at 2,894,764 to 2,895,375 _13400 OKGIIK_13405: OKGIIK_13405 - IS3 family transposase, at 2,895,346 to 2,896,164 _13405 OKGIIK_13410: OKGIIK_13410 - Mobile element protein, at 2,896,212 to 2,896,499 _13410 Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -2 -1 0 1at 2893.793 kb on + strandat 2893.806 kb on - strandat 2894.015 kb on + strand, within queFat 2894.015 kb on + strand, within queFat 2894.015 kb on + strand, within queFat 2894.378 kb on + strand, within queFat 2894.480 kb on + strand, within queFat 2894.481 kb on - strand, within queFat 2894.481 kb on - strand, within queFat 2894.565 kb on + strandat 2894.565 kb on + strandat 2894.574 kb on - strandat 2894.785 kb on - strandat 2894.785 kb on - strandat 2895.055 kb on + strand, within OKGIIK_13400at 2895.056 kb on - strand, within OKGIIK_13400at 2895.056 kb on - strand, within OKGIIK_13400at 2895.062 kb on + strand, within OKGIIK_13400at 2895.062 kb on + strand, within OKGIIK_13400at 2895.063 kb on - strand, within OKGIIK_13400at 2895.106 kb on + strand, within OKGIIK_13400at 2895.106 kb on + strand, within OKGIIK_13400at 2895.106 kb on + strand, within OKGIIK_13400at 2895.106 kb on + strand, within OKGIIK_13400at 2895.106 kb on + strand, within OKGIIK_13400at 2895.106 kb on + strand, within OKGIIK_13400at 2895.107 kb on - strand, within OKGIIK_13400at 2895.107 kb on - strand, within OKGIIK_13400at 2895.107 kb on - strand, within OKGIIK_13400at 2895.107 kb on - strand, within OKGIIK_13400at 2895.107 kb on - strand, within OKGIIK_13400at 2895.166 kb on + strand, within OKGIIK_13400at 2895.166 kb on + strand, within OKGIIK_13400at 2895.167 kb on - strand, within OKGIIK_13400at 2895.167 kb on - strand, within OKGIIK_13400at 2895.280 kb on + strand, within OKGIIK_13400at 2895.280 kb on + strand, within OKGIIK_13400at 2895.280 kb on + strand, within OKGIIK_13400at 2895.281 kb on - strand, within OKGIIK_13400at 2895.281 kb on - strand, within OKGIIK_13400at 2895.374 kb on - strandat 2895.374 kb on - strandat 2895.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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2,893,793 + -0.4
2,893,806 - -0.2
2,894,015 + queF OKGIIK_13395 0.32 -1.5
2,894,015 + queF OKGIIK_13395 0.32 -0.1
2,894,015 + queF OKGIIK_13395 0.32 -0.9
2,894,378 + queF OKGIIK_13395 0.76 -0.6
2,894,480 + queF OKGIIK_13395 0.88 -0.8
2,894,481 - queF OKGIIK_13395 0.88 -0.3
2,894,481 - queF OKGIIK_13395 0.88 +0.9
2,894,565 + +0.2
2,894,565 + +0.5
2,894,574 - +0.3
2,894,785 - +0.1
2,894,785 - +1.4
2,895,055 + OKGIIK_13400 0.48 -1.1
2,895,056 - OKGIIK_13400 0.48 -1.0
2,895,056 - OKGIIK_13400 0.48 +1.5
2,895,062 + OKGIIK_13400 0.49 -0.2
2,895,062 + OKGIIK_13400 0.49 +0.1
2,895,063 - OKGIIK_13400 0.49 -0.2
2,895,106 + OKGIIK_13400 0.56 +1.2
2,895,106 + OKGIIK_13400 0.56 +0.2
2,895,106 + OKGIIK_13400 0.56 -0.9
2,895,106 + OKGIIK_13400 0.56 -0.2
2,895,106 + OKGIIK_13400 0.56 -2.1
2,895,106 + OKGIIK_13400 0.56 +0.1
2,895,107 - OKGIIK_13400 0.56 +0.5
2,895,107 - OKGIIK_13400 0.56 +1.2
2,895,107 - OKGIIK_13400 0.56 -0.1
2,895,107 - OKGIIK_13400 0.56 -0.9
2,895,107 - OKGIIK_13400 0.56 -0.4
2,895,166 + OKGIIK_13400 0.66 +0.9
2,895,166 + OKGIIK_13400 0.66 -0.1
2,895,167 - OKGIIK_13400 0.66 -0.1
2,895,167 - OKGIIK_13400 0.66 -2.4
2,895,280 + OKGIIK_13400 0.84 -1.1
2,895,280 + OKGIIK_13400 0.84 -1.6
2,895,280 + OKGIIK_13400 0.84 -1.0
2,895,281 - OKGIIK_13400 0.84 -1.8
2,895,281 - OKGIIK_13400 0.84 -1.0
2,895,374 - +0.2
2,895,374 - +0.5
2,895,374 - -0.5

Or see this region's nucleotide sequence