Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13335

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
2,879,352	+	yifB	OKGIIK_13330	0.67	-0.7
2,879,353	-	yifB	OKGIIK_13330	0.67	-0.1
2,879,353	-	yifB	OKGIIK_13330	0.67	-1.6
2,879,353	-	yifB	OKGIIK_13330	0.67	-0.6
2,879,353	-	yifB	OKGIIK_13330	0.67	-1.6
2,879,663	-	yifB	OKGIIK_13330	0.88	-2.4
2,879,919	+				-0.6
2,879,919	+				-1.4
2,879,920	-				-0.6
2,879,920	-				-1.2
2,879,920	-				-0.6
2,879,920	-				-0.6
2,879,920	-				+0.4
2,879,923	+				+0.8
2,879,923	+				-0.9
2,879,923	+				+0.9
2,879,923	+				-1.4
2,879,923	+				+2.4
2,879,923	+				-0.5
2,879,923	+				+0.2
2,879,924	-				+2.3
2,879,924	-				-0.6
2,879,924	-				-0.5
2,879,924	-				+1.2
2,880,075	+	ubiK	OKGIIK_13335	0.33	-0.1
2,880,075	+	ubiK	OKGIIK_13335	0.33	+0.2
2,880,076	-	ubiK	OKGIIK_13335	0.34	-0.4
2,880,076	-	ubiK	OKGIIK_13335	0.34	-0.1
2,880,076	-	ubiK	OKGIIK_13335	0.34	+1.4
2,880,195	+	ubiK	OKGIIK_13335	0.79	-0.8
2,880,195	+	ubiK	OKGIIK_13335	0.79	-0.1
2,880,195	+	ubiK	OKGIIK_13335	0.79	+1.8
2,880,231	-				-0.9
2,880,274	+				+1.5
2,880,274	+				-0.6
2,880,274	+				+1.6
2,880,274	+				+0.2
2,880,274	+				+0.9
2,880,274	+				-1.6
2,880,275	-				-1.3
2,880,278	+				+0.2
2,880,278	+				-1.3
2,880,278	+				-1.2
2,880,278	+				-1.3
2,880,278	+				+1.5
2,880,279	-				-0.4
2,880,279	-				-0.4
2,880,279	-				-0.4
2,880,281	+				-0.1
2,880,281	+				-1.1
2,880,281	+				-1.1
2,880,282	-				+0.3
2,880,282	-				-0.1
2,880,282	-				-0.4
2,880,282	-				-0.9
2,880,282	-				-0.9
2,880,311	+				+0.4
2,880,312	-				+0.5
2,880,312	-				-0.4
2,880,330	+				+1.7
2,880,330	+				-2.6
2,880,331	-				-1.1
2,880,342	+				-0.3
2,880,342	+				-0.9
2,880,343	-				-0.6
2,880,343	-				+0.7
2,880,343	-				+1.9
2,880,416	+				-0.4
2,880,554	+	glnK	OKGIIK_13340	0.37	-2.4
2,880,564	+	glnK	OKGIIK_13340	0.40	+0.6
2,880,565	-	glnK	OKGIIK_13340	0.40	-2.1
2,880,579	+	glnK	OKGIIK_13340	0.44	+0.6
2,880,579	+	glnK	OKGIIK_13340	0.44	-0.4
2,880,579	+	glnK	OKGIIK_13340	0.44	-1.2
2,880,579	+	glnK	OKGIIK_13340	0.44	+0.4
2,880,580	-	glnK	OKGIIK_13340	0.45	+0.2
2,880,580	-	glnK	OKGIIK_13340	0.45	-2.1
2,880,580	-	glnK	OKGIIK_13340	0.45	-0.1
2,880,580	-	glnK	OKGIIK_13340	0.45	-0.1
2,880,580	-	glnK	OKGIIK_13340	0.45	-2.6
2,880,580	-	glnK	OKGIIK_13340	0.45	-0.2
2,880,580	-	glnK	OKGIIK_13340	0.45	+0.0
2,880,580	-	glnK	OKGIIK_13340	0.45	+0.2
2,880,580	-	glnK	OKGIIK_13340	0.45	-1.1
2,880,765	+				-0.1
2,880,765	+				-0.6
2,880,765	+				+1.0
2,880,811	+				+0.9
2,880,812	-				-0.4
2,880,819	+				+0.4
2,880,819	+				-0.8
2,880,819	+				-0.5
2,880,819	+				+0.1
2,880,819	+				-1.7
2,880,819	+				-0.3
2,880,819	+				-0.8
2,880,819	+				-0.9
2,880,821	+				+1.1
2,880,821	+				-0.9
2,880,821	+				-1.1
2,880,821	+				-1.4
2,880,821	+				-0.4
2,880,821	+				-1.2
2,880,822	-				+0.7
2,880,822	-				-1.4
2,880,822	-				+1.1
2,880,822	-				+0.4
2,880,822	-				+1.1
2,880,822	-				+0.5
2,880,822	-				+2.3
2,880,822	-				+2.2