Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12105

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspoT and rpoZ are separated by 127 nucleotidesrpoZ and OKGIIK_12110 are separated by 199 nucleotides OKGIIK_12100: spoT - guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, at 2,607,855 to 2,610,020 spoT OKGIIK_12105: rpoZ - DNA-directed RNA polymerase subunit omega, at 2,610,148 to 2,610,438 rpoZ OKGIIK_12110: OKGIIK_12110 - ABC transporter, at 2,610,638 to 2,611,468 _12110 Position (kb) 2610 2611Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2610.130 kb on + strandat 2610.256 kb on - strand, within rpoZat 2610.457 kb on - strandat 2610.457 kb on - strandat 2610.457 kb on - strandat 2610.466 kb on - strandat 2610.466 kb on - strandat 2610.483 kb on - strandat 2610.483 kb on - strandat 2610.519 kb on + strandat 2610.519 kb on + strandat 2610.519 kb on + strandat 2610.519 kb on + strandat 2610.519 kb on + strandat 2610.519 kb on + strandat 2610.519 kb on + strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.520 kb on - strandat 2610.583 kb on - strandat 2610.584 kb on + strandat 2610.584 kb on + strandat 2610.584 kb on + strandat 2610.597 kb on + strandat 2610.597 kb on + strandat 2610.597 kb on + strandat 2610.598 kb on - strandat 2610.598 kb on - strandat 2610.598 kb on - strandat 2610.598 kb on - strandat 2610.598 kb on - strandat 2610.603 kb on + strandat 2610.603 kb on + strandat 2610.603 kb on + strandat 2610.603 kb on + strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.604 kb on - strandat 2610.752 kb on + strand, within OKGIIK_12110at 2610.752 kb on + strand, within OKGIIK_12110at 2610.752 kb on + strand, within OKGIIK_12110at 2610.752 kb on + strand, within OKGIIK_12110at 2610.752 kb on + strand, within OKGIIK_12110at 2610.752 kb on + strand, within OKGIIK_12110at 2610.752 kb on + strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.753 kb on - strand, within OKGIIK_12110at 2610.767 kb on + strand, within OKGIIK_12110at 2610.767 kb on + strand, within OKGIIK_12110at 2610.768 kb on - strand, within OKGIIK_12110at 2610.768 kb on - strand, within OKGIIK_12110at 2610.768 kb on - strand, within OKGIIK_12110at 2610.874 kb on + strand, within OKGIIK_12110at 2610.874 kb on + strand, within OKGIIK_12110at 2610.874 kb on + strand, within OKGIIK_12110at 2610.874 kb on + strand, within OKGIIK_12110at 2610.875 kb on - strand, within OKGIIK_12110at 2610.875 kb on - strand, within OKGIIK_12110at 2611.076 kb on + strand, within OKGIIK_12110at 2611.076 kb on + strand, within OKGIIK_12110at 2611.076 kb on + strand, within OKGIIK_12110at 2611.077 kb on - strand, within OKGIIK_12110at 2611.077 kb on - strand, within OKGIIK_12110at 2611.077 kb on - strand, within OKGIIK_12110at 2611.077 kb on - strand, within OKGIIK_12110at 2611.077 kb on - strand, within OKGIIK_12110at 2611.105 kb on + strand, within OKGIIK_12110at 2611.143 kb on - strand, within OKGIIK_12110at 2611.143 kb on - strand, within OKGIIK_12110at 2611.143 kb on - strand, within OKGIIK_12110at 2611.143 kb on - strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.166 kb on + strand, within OKGIIK_12110at 2611.167 kb on - strand, within OKGIIK_12110at 2611.184 kb on + strand, within OKGIIK_12110at 2611.184 kb on + strand, within OKGIIK_12110at 2611.184 kb on + strand, within OKGIIK_12110at 2611.184 kb on + strand, within OKGIIK_12110at 2611.184 kb on + strand, within OKGIIK_12110at 2611.184 kb on + strand, within OKGIIK_12110at 2611.185 kb on - strand, within OKGIIK_12110at 2611.185 kb on - strand, within OKGIIK_12110at 2611.185 kb on - strand, within OKGIIK_12110at 2611.185 kb on - strand, within OKGIIK_12110at 2611.185 kb on - strand, within OKGIIK_12110at 2611.199 kb on + strand, within OKGIIK_12110at 2611.199 kb on + strand, within OKGIIK_12110at 2611.199 kb on + strand, within OKGIIK_12110at 2611.200 kb on - strand, within OKGIIK_12110at 2611.200 kb on - strand, within OKGIIK_12110at 2611.217 kb on + strand, within OKGIIK_12110at 2611.217 kb on + strand, within OKGIIK_12110at 2611.217 kb on + strand, within OKGIIK_12110at 2611.217 kb on + strand, within OKGIIK_12110at 2611.218 kb on - strand, within OKGIIK_12110at 2611.218 kb on - strand, within OKGIIK_12110at 2611.218 kb on - strand, within OKGIIK_12110at 2611.218 kb on - strand, within OKGIIK_12110at 2611.218 kb on - strand, within OKGIIK_12110at 2611.218 kb on - strand, within OKGIIK_12110at 2611.274 kb on + strand, within OKGIIK_12110at 2611.274 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.283 kb on + strand, within OKGIIK_12110at 2611.284 kb on - strand, within OKGIIK_12110at 2611.284 kb on - strand, within OKGIIK_12110at 2611.284 kb on - strand, within OKGIIK_12110at 2611.284 kb on - strand, within OKGIIK_12110at 2611.284 kb on - strand, within OKGIIK_12110at 2611.284 kb on - strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.287 kb on + strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.288 kb on - strand, within OKGIIK_12110at 2611.322 kb on + strand, within OKGIIK_12110at 2611.322 kb on + strand, within OKGIIK_12110at 2611.322 kb on + strand, within OKGIIK_12110at 2611.322 kb on + strand, within OKGIIK_12110at 2611.323 kb on - strand, within OKGIIK_12110at 2611.323 kb on - strand, within OKGIIK_12110at 2611.323 kb on - strand, within OKGIIK_12110at 2611.323 kb on - strand, within OKGIIK_12110at 2611.323 kb on - strand, within OKGIIK_12110at 2611.323 kb on - strand, within OKGIIK_12110at 2611.331 kb on + strand, within OKGIIK_12110at 2611.331 kb on + strand, within OKGIIK_12110at 2611.331 kb on + strand, within OKGIIK_12110at 2611.331 kb on + strand, within OKGIIK_12110at 2611.331 kb on + strand, within OKGIIK_12110at 2611.331 kb on + strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110at 2611.332 kb on - strand, within OKGIIK_12110

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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2,610,130 + -0.0
2,610,256 - rpoZ OKGIIK_12105 0.37 -1.8
2,610,457 - -1.0
2,610,457 - -1.5
2,610,457 - -1.0
2,610,466 - -1.8
2,610,466 - +1.0
2,610,483 - -0.6
2,610,483 - -0.8
2,610,519 + +0.6
2,610,519 + +1.2
2,610,519 + -1.1
2,610,519 + -0.3
2,610,519 + -1.0
2,610,519 + +2.3
2,610,519 + -1.6
2,610,520 - +0.4
2,610,520 - +0.5
2,610,520 - +0.1
2,610,520 - +0.4
2,610,520 - -0.0
2,610,520 - -0.2
2,610,520 - -1.2
2,610,520 - +0.3
2,610,520 - +0.6
2,610,520 - -0.6
2,610,520 - -0.3
2,610,520 - -1.0
2,610,583 - +1.6
2,610,584 + +0.2
2,610,584 + -1.5
2,610,584 + +0.1
2,610,597 + +0.6
2,610,597 + +0.8
2,610,597 + +0.2
2,610,598 - +0.2
2,610,598 - -0.3
2,610,598 - +0.7
2,610,598 - -0.0
2,610,598 - -0.2
2,610,603 + -0.3
2,610,603 + +1.7
2,610,603 + -0.6
2,610,603 + -0.0
2,610,604 - +0.4
2,610,604 - -0.0
2,610,604 - -1.7
2,610,604 - -0.2
2,610,604 - +0.1
2,610,604 - -1.0
2,610,604 - +0.1
2,610,604 - -0.7
2,610,604 - +0.4
2,610,604 - +0.5
2,610,604 - +0.6
2,610,604 - +2.8
2,610,604 - +0.4
2,610,604 - +2.0
2,610,604 - +0.8
2,610,752 + OKGIIK_12110 0.14 -0.0
2,610,752 + OKGIIK_12110 0.14 +0.4
2,610,752 + OKGIIK_12110 0.14 -0.1
2,610,752 + OKGIIK_12110 0.14 -1.0
2,610,752 + OKGIIK_12110 0.14 -0.8
2,610,752 + OKGIIK_12110 0.14 -1.2
2,610,752 + OKGIIK_12110 0.14 -0.8
2,610,753 - OKGIIK_12110 0.14 -1.3
2,610,753 - OKGIIK_12110 0.14 -1.3
2,610,753 - OKGIIK_12110 0.14 -0.6
2,610,753 - OKGIIK_12110 0.14 -2.3
2,610,753 - OKGIIK_12110 0.14 +1.0
2,610,753 - OKGIIK_12110 0.14 -1.0
2,610,753 - OKGIIK_12110 0.14 -0.3
2,610,753 - OKGIIK_12110 0.14 -0.2
2,610,753 - OKGIIK_12110 0.14 -0.6
2,610,753 - OKGIIK_12110 0.14 -0.7
2,610,767 + OKGIIK_12110 0.16 -0.3
2,610,767 + OKGIIK_12110 0.16 -0.6
2,610,768 - OKGIIK_12110 0.16 -0.2
2,610,768 - OKGIIK_12110 0.16 -0.0
2,610,768 - OKGIIK_12110 0.16 +0.1
2,610,874 + OKGIIK_12110 0.28 -0.7
2,610,874 + OKGIIK_12110 0.28 -1.5
2,610,874 + OKGIIK_12110 0.28 +0.3
2,610,874 + OKGIIK_12110 0.28 -0.3
2,610,875 - OKGIIK_12110 0.29 -1.5
2,610,875 - OKGIIK_12110 0.29 +0.2
2,611,076 + OKGIIK_12110 0.53 -0.6
2,611,076 + OKGIIK_12110 0.53 -0.3
2,611,076 + OKGIIK_12110 0.53 -0.0
2,611,077 - OKGIIK_12110 0.53 -0.7
2,611,077 - OKGIIK_12110 0.53 -0.6
2,611,077 - OKGIIK_12110 0.53 +0.8
2,611,077 - OKGIIK_12110 0.53 -1.5
2,611,077 - OKGIIK_12110 0.53 -0.2
2,611,105 + OKGIIK_12110 0.56 -0.0
2,611,143 - OKGIIK_12110 0.61 -0.1
2,611,143 - OKGIIK_12110 0.61 -1.0
2,611,143 - OKGIIK_12110 0.61 -0.3
2,611,143 - OKGIIK_12110 0.61 +1.3
2,611,166 + OKGIIK_12110 0.64 +0.2
2,611,166 + OKGIIK_12110 0.64 -1.9
2,611,166 + OKGIIK_12110 0.64 +0.8
2,611,166 + OKGIIK_12110 0.64 +0.2
2,611,166 + OKGIIK_12110 0.64 -0.6
2,611,166 + OKGIIK_12110 0.64 -1.2
2,611,166 + OKGIIK_12110 0.64 -1.2
2,611,166 + OKGIIK_12110 0.64 -1.8
2,611,166 + OKGIIK_12110 0.64 -1.0
2,611,167 - OKGIIK_12110 0.64 +1.7
2,611,184 + OKGIIK_12110 0.66 +0.5
2,611,184 + OKGIIK_12110 0.66 +0.2
2,611,184 + OKGIIK_12110 0.66 +1.2
2,611,184 + OKGIIK_12110 0.66 +0.4
2,611,184 + OKGIIK_12110 0.66 -1.3
2,611,184 + OKGIIK_12110 0.66 -1.6
2,611,185 - OKGIIK_12110 0.66 -1.3
2,611,185 - OKGIIK_12110 0.66 -1.3
2,611,185 - OKGIIK_12110 0.66 -0.6
2,611,185 - OKGIIK_12110 0.66 -1.9
2,611,185 - OKGIIK_12110 0.66 +0.4
2,611,199 + OKGIIK_12110 0.68 -0.0
2,611,199 + OKGIIK_12110 0.68 -0.9
2,611,199 + OKGIIK_12110 0.68 -0.3
2,611,200 - OKGIIK_12110 0.68 +1.1
2,611,200 - OKGIIK_12110 0.68 +0.8
2,611,217 + OKGIIK_12110 0.70 +1.0
2,611,217 + OKGIIK_12110 0.70 -0.3
2,611,217 + OKGIIK_12110 0.70 -0.3
2,611,217 + OKGIIK_12110 0.70 +0.1
2,611,218 - OKGIIK_12110 0.70 +0.4
2,611,218 - OKGIIK_12110 0.70 -0.3
2,611,218 - OKGIIK_12110 0.70 +0.7
2,611,218 - OKGIIK_12110 0.70 -0.0
2,611,218 - OKGIIK_12110 0.70 -0.3
2,611,218 - OKGIIK_12110 0.70 -0.8
2,611,274 + OKGIIK_12110 0.77 +0.7
2,611,274 + OKGIIK_12110 0.77 -0.6
2,611,283 + OKGIIK_12110 0.78 -0.6
2,611,283 + OKGIIK_12110 0.78 -0.8
2,611,283 + OKGIIK_12110 0.78 -0.0
2,611,283 + OKGIIK_12110 0.78 +0.6
2,611,283 + OKGIIK_12110 0.78 -0.2
2,611,283 + OKGIIK_12110 0.78 -0.6
2,611,283 + OKGIIK_12110 0.78 -1.9
2,611,284 - OKGIIK_12110 0.78 +0.4
2,611,284 - OKGIIK_12110 0.78 -0.3
2,611,284 - OKGIIK_12110 0.78 -0.0
2,611,284 - OKGIIK_12110 0.78 -1.3
2,611,284 - OKGIIK_12110 0.78 -1.3
2,611,284 - OKGIIK_12110 0.78 +0.1
2,611,287 + OKGIIK_12110 0.78 +1.2
2,611,287 + OKGIIK_12110 0.78 +0.4
2,611,287 + OKGIIK_12110 0.78 -0.3
2,611,287 + OKGIIK_12110 0.78 -1.3
2,611,287 + OKGIIK_12110 0.78 -0.6
2,611,287 + OKGIIK_12110 0.78 +0.7
2,611,287 + OKGIIK_12110 0.78 +0.1
2,611,287 + OKGIIK_12110 0.78 -1.6
2,611,287 + OKGIIK_12110 0.78 +1.7
2,611,287 + OKGIIK_12110 0.78 -0.6
2,611,287 + OKGIIK_12110 0.78 -1.9
2,611,287 + OKGIIK_12110 0.78 -1.3
2,611,287 + OKGIIK_12110 0.78 -0.2
2,611,287 + OKGIIK_12110 0.78 -1.3
2,611,288 - OKGIIK_12110 0.78 -0.0
2,611,288 - OKGIIK_12110 0.78 -2.0
2,611,288 - OKGIIK_12110 0.78 -0.6
2,611,288 - OKGIIK_12110 0.78 -1.1
2,611,288 - OKGIIK_12110 0.78 -0.3
2,611,288 - OKGIIK_12110 0.78 +0.5
2,611,288 - OKGIIK_12110 0.78 -0.3
2,611,288 - OKGIIK_12110 0.78 +0.4
2,611,288 - OKGIIK_12110 0.78 -0.8
2,611,288 - OKGIIK_12110 0.78 +0.8
2,611,288 - OKGIIK_12110 0.78 -2.4
2,611,322 + OKGIIK_12110 0.82 +0.6
2,611,322 + OKGIIK_12110 0.82 +1.2
2,611,322 + OKGIIK_12110 0.82 +0.4
2,611,322 + OKGIIK_12110 0.82 +0.1
2,611,323 - OKGIIK_12110 0.82 -0.6
2,611,323 - OKGIIK_12110 0.82 -1.0
2,611,323 - OKGIIK_12110 0.82 -1.8
2,611,323 - OKGIIK_12110 0.82 -0.6
2,611,323 - OKGIIK_12110 0.82 -1.0
2,611,323 - OKGIIK_12110 0.82 -1.7
2,611,331 + OKGIIK_12110 0.83 -1.3
2,611,331 + OKGIIK_12110 0.83 +0.4
2,611,331 + OKGIIK_12110 0.83 +2.0
2,611,331 + OKGIIK_12110 0.83 -0.6
2,611,331 + OKGIIK_12110 0.83 -1.0
2,611,331 + OKGIIK_12110 0.83 +2.2
2,611,332 - OKGIIK_12110 0.84 -1.0
2,611,332 - OKGIIK_12110 0.84 -0.0
2,611,332 - OKGIIK_12110 0.84 -1.3
2,611,332 - OKGIIK_12110 0.84 -0.2
2,611,332 - OKGIIK_12110 0.84 -0.8
2,611,332 - OKGIIK_12110 0.84 +0.4
2,611,332 - OKGIIK_12110 0.84 +0.4
2,611,332 - OKGIIK_12110 0.84 -1.8

Or see this region's nucleotide sequence