Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11315

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_11310 and OKGIIK_11315 are separated by 169 nucleotidesOKGIIK_11315 and salY are separated by 135 nucleotides OKGIIK_11310: OKGIIK_11310 - Peptide ABC transporter permease, at 2,426,171 to 2,427,424 _11310 OKGIIK_11315: OKGIIK_11315 - Peptide ABC transporter permease, at 2,427,594 to 2,428,910 _11315 OKGIIK_11320: salY - peptide ABC transporter permease, at 2,429,046 to 2,430,287 salY Position (kb) 2427 2428 2429Strain fitness (log2 ratio) -2 -1 0 1 2at 2426.640 kb on + strand, within OKGIIK_11310at 2426.640 kb on + strand, within OKGIIK_11310at 2426.641 kb on - strand, within OKGIIK_11310at 2426.641 kb on - strand, within OKGIIK_11310at 2426.641 kb on - strand, within OKGIIK_11310at 2426.703 kb on + strand, within OKGIIK_11310at 2426.703 kb on + strand, within OKGIIK_11310at 2426.703 kb on + strand, within OKGIIK_11310at 2426.704 kb on - strand, within OKGIIK_11310at 2426.704 kb on - strand, within OKGIIK_11310at 2426.704 kb on - strand, within OKGIIK_11310at 2426.844 kb on + strand, within OKGIIK_11310at 2426.844 kb on + strand, within OKGIIK_11310at 2426.844 kb on + strand, within OKGIIK_11310at 2426.845 kb on - strand, within OKGIIK_11310at 2426.845 kb on - strand, within OKGIIK_11310at 2427.027 kb on + strand, within OKGIIK_11310at 2427.027 kb on + strand, within OKGIIK_11310at 2427.027 kb on + strand, within OKGIIK_11310at 2427.027 kb on + strand, within OKGIIK_11310at 2427.027 kb on + strand, within OKGIIK_11310at 2427.028 kb on - strand, within OKGIIK_11310at 2427.028 kb on - strand, within OKGIIK_11310at 2427.028 kb on - strand, within OKGIIK_11310at 2427.028 kb on - strand, within OKGIIK_11310at 2427.028 kb on - strand, within OKGIIK_11310at 2427.030 kb on + strand, within OKGIIK_11310at 2427.030 kb on + strand, within OKGIIK_11310at 2427.030 kb on + strand, within OKGIIK_11310at 2427.030 kb on + strand, within OKGIIK_11310at 2427.031 kb on - strand, within OKGIIK_11310at 2427.320 kb on + strandat 2427.321 kb on - strandat 2427.471 kb on - strandat 2427.471 kb on - strandat 2427.565 kb on + strandat 2427.649 kb on + strandat 2427.649 kb on + strandat 2427.682 kb on - strandat 2427.793 kb on - strand, within OKGIIK_11315at 2427.845 kb on - strand, within OKGIIK_11315at 2427.845 kb on - strand, within OKGIIK_11315at 2427.845 kb on - strand, within OKGIIK_11315at 2427.845 kb on - strand, within OKGIIK_11315at 2428.090 kb on + strand, within OKGIIK_11315at 2428.091 kb on - strand, within OKGIIK_11315at 2428.091 kb on - strand, within OKGIIK_11315at 2428.102 kb on + strand, within OKGIIK_11315at 2428.102 kb on + strand, within OKGIIK_11315at 2428.103 kb on - strand, within OKGIIK_11315at 2428.103 kb on - strand, within OKGIIK_11315at 2428.103 kb on - strand, within OKGIIK_11315at 2428.103 kb on - strand, within OKGIIK_11315at 2428.150 kb on + strand, within OKGIIK_11315at 2428.150 kb on + strand, within OKGIIK_11315at 2428.150 kb on + strand, within OKGIIK_11315at 2428.150 kb on + strand, within OKGIIK_11315at 2428.150 kb on + strand, within OKGIIK_11315at 2428.150 kb on + strand, within OKGIIK_11315at 2428.151 kb on - strand, within OKGIIK_11315at 2428.151 kb on - strand, within OKGIIK_11315at 2428.151 kb on - strand, within OKGIIK_11315at 2428.151 kb on - strand, within OKGIIK_11315at 2428.151 kb on - strand, within OKGIIK_11315at 2428.369 kb on + strand, within OKGIIK_11315at 2428.501 kb on + strand, within OKGIIK_11315at 2428.501 kb on + strand, within OKGIIK_11315at 2428.612 kb on + strand, within OKGIIK_11315at 2428.612 kb on + strand, within OKGIIK_11315at 2428.612 kb on + strand, within OKGIIK_11315at 2428.612 kb on + strand, within OKGIIK_11315at 2428.612 kb on + strand, within OKGIIK_11315at 2428.612 kb on + strand, within OKGIIK_11315at 2428.613 kb on - strand, within OKGIIK_11315at 2428.613 kb on - strand, within OKGIIK_11315at 2428.613 kb on - strand, within OKGIIK_11315at 2428.613 kb on - strand, within OKGIIK_11315at 2428.613 kb on - strand, within OKGIIK_11315at 2428.613 kb on - strand, within OKGIIK_11315at 2428.669 kb on + strand, within OKGIIK_11315at 2428.669 kb on + strand, within OKGIIK_11315at 2428.669 kb on + strand, within OKGIIK_11315at 2428.669 kb on + strand, within OKGIIK_11315at 2428.669 kb on + strand, within OKGIIK_11315at 2428.669 kb on + strand, within OKGIIK_11315at 2428.898 kb on - strandat 2428.900 kb on + strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.901 kb on - strandat 2428.971 kb on - strandat 2429.155 kb on + strandat 2429.156 kb on - strandat 2429.156 kb on - strandat 2429.275 kb on + strand, within salYat 2429.275 kb on + strand, within salYat 2429.275 kb on + strand, within salYat 2429.275 kb on + strand, within salYat 2429.275 kb on + strand, within salYat 2429.276 kb on - strand, within salYat 2429.276 kb on - strand, within salYat 2429.444 kb on - strand, within salYat 2429.444 kb on - strand, within salYat 2429.444 kb on - strand, within salYat 2429.444 kb on - strand, within salYat 2429.444 kb on - strand, within salYat 2429.444 kb on - strand, within salYat 2429.467 kb on + strand, within salYat 2429.467 kb on + strand, within salYat 2429.467 kb on + strand, within salYat 2429.467 kb on + strand, within salYat 2429.467 kb on + strand, within salYat 2429.467 kb on + strand, within salYat 2429.468 kb on - strand, within salYat 2429.518 kb on + strand, within salYat 2429.518 kb on + strand, within salYat 2429.518 kb on + strand, within salYat 2429.519 kb on - strand, within salYat 2429.519 kb on - strand, within salYat 2429.581 kb on + strand, within salYat 2429.581 kb on + strand, within salYat 2429.581 kb on + strand, within salYat 2429.581 kb on + strand, within salYat 2429.581 kb on + strand, within salYat 2429.581 kb on + strand, within salYat 2429.581 kb on + strand, within salYat 2429.582 kb on - strand, within salYat 2429.582 kb on - strand, within salYat 2429.582 kb on - strand, within salYat 2429.582 kb on - strand, within salYat 2429.582 kb on - strand, within salYat 2429.582 kb on - strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.584 kb on + strand, within salYat 2429.585 kb on - strand, within salYat 2429.585 kb on - strand, within salYat 2429.585 kb on - strand, within salYat 2429.585 kb on - strand, within salYat 2429.585 kb on - strand, within salYat 2429.585 kb on - strand, within salYat 2429.585 kb on - strand, within salYat 2429.638 kb on + strand, within salYat 2429.638 kb on + strand, within salYat 2429.638 kb on + strand, within salYat 2429.638 kb on + strand, within salYat 2429.638 kb on + strand, within salYat 2429.722 kb on + strand, within salYat 2429.722 kb on + strand, within salYat 2429.723 kb on - strand, within salYat 2429.905 kb on + strand, within salYat 2429.906 kb on - strand, within salY

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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2,426,640 + OKGIIK_11310 0.37 -0.6
2,426,640 + OKGIIK_11310 0.37 -1.2
2,426,641 - OKGIIK_11310 0.37 +0.2
2,426,641 - OKGIIK_11310 0.37 -0.2
2,426,641 - OKGIIK_11310 0.37 +1.3
2,426,703 + OKGIIK_11310 0.42 -0.5
2,426,703 + OKGIIK_11310 0.42 -1.3
2,426,703 + OKGIIK_11310 0.42 -1.4
2,426,704 - OKGIIK_11310 0.43 -0.6
2,426,704 - OKGIIK_11310 0.43 +0.2
2,426,704 - OKGIIK_11310 0.43 +1.0
2,426,844 + OKGIIK_11310 0.54 -0.4
2,426,844 + OKGIIK_11310 0.54 +1.4
2,426,844 + OKGIIK_11310 0.54 -0.0
2,426,845 - OKGIIK_11310 0.54 +1.0
2,426,845 - OKGIIK_11310 0.54 +0.3
2,427,027 + OKGIIK_11310 0.68 +0.2
2,427,027 + OKGIIK_11310 0.68 -0.6
2,427,027 + OKGIIK_11310 0.68 +0.8
2,427,027 + OKGIIK_11310 0.68 -2.0
2,427,027 + OKGIIK_11310 0.68 +0.6
2,427,028 - OKGIIK_11310 0.68 -0.4
2,427,028 - OKGIIK_11310 0.68 -1.4
2,427,028 - OKGIIK_11310 0.68 +0.5
2,427,028 - OKGIIK_11310 0.68 +0.4
2,427,028 - OKGIIK_11310 0.68 -0.5
2,427,030 + OKGIIK_11310 0.69 -1.0
2,427,030 + OKGIIK_11310 0.69 -1.2
2,427,030 + OKGIIK_11310 0.69 -0.4
2,427,030 + OKGIIK_11310 0.69 -0.4
2,427,031 - OKGIIK_11310 0.69 -1.6
2,427,320 + -0.0
2,427,321 - -1.6
2,427,471 - -1.5
2,427,471 - -2.0
2,427,565 + -0.4
2,427,649 + -0.8
2,427,649 + +1.2
2,427,682 - +1.4
2,427,793 - OKGIIK_11315 0.15 -0.0
2,427,845 - OKGIIK_11315 0.19 -0.8
2,427,845 - OKGIIK_11315 0.19 -0.0
2,427,845 - OKGIIK_11315 0.19 +0.2
2,427,845 - OKGIIK_11315 0.19 -0.4
2,428,090 + OKGIIK_11315 0.38 +0.2
2,428,091 - OKGIIK_11315 0.38 +0.6
2,428,091 - OKGIIK_11315 0.38 +2.6
2,428,102 + OKGIIK_11315 0.39 +0.2
2,428,102 + OKGIIK_11315 0.39 -1.4
2,428,103 - OKGIIK_11315 0.39 -1.5
2,428,103 - OKGIIK_11315 0.39 -1.9
2,428,103 - OKGIIK_11315 0.39 -1.7
2,428,103 - OKGIIK_11315 0.39 +0.2
2,428,150 + OKGIIK_11315 0.42 -1.5
2,428,150 + OKGIIK_11315 0.42 +0.2
2,428,150 + OKGIIK_11315 0.42 -0.4
2,428,150 + OKGIIK_11315 0.42 -2.2
2,428,150 + OKGIIK_11315 0.42 +1.0
2,428,150 + OKGIIK_11315 0.42 +0.5
2,428,151 - OKGIIK_11315 0.42 -1.0
2,428,151 - OKGIIK_11315 0.42 -0.6
2,428,151 - OKGIIK_11315 0.42 -1.8
2,428,151 - OKGIIK_11315 0.42 -0.4
2,428,151 - OKGIIK_11315 0.42 -0.4
2,428,369 + OKGIIK_11315 0.59 +0.2
2,428,501 + OKGIIK_11315 0.69 -0.4
2,428,501 + OKGIIK_11315 0.69 -0.2
2,428,612 + OKGIIK_11315 0.77 +1.0
2,428,612 + OKGIIK_11315 0.77 -0.6
2,428,612 + OKGIIK_11315 0.77 +1.2
2,428,612 + OKGIIK_11315 0.77 -0.0
2,428,612 + OKGIIK_11315 0.77 +0.3
2,428,612 + OKGIIK_11315 0.77 +0.6
2,428,613 - OKGIIK_11315 0.77 -0.8
2,428,613 - OKGIIK_11315 0.77 -1.4
2,428,613 - OKGIIK_11315 0.77 -2.6
2,428,613 - OKGIIK_11315 0.77 +0.3
2,428,613 - OKGIIK_11315 0.77 +0.0
2,428,613 - OKGIIK_11315 0.77 -0.0
2,428,669 + OKGIIK_11315 0.82 -0.3
2,428,669 + OKGIIK_11315 0.82 -0.0
2,428,669 + OKGIIK_11315 0.82 +0.2
2,428,669 + OKGIIK_11315 0.82 +1.6
2,428,669 + OKGIIK_11315 0.82 +0.6
2,428,669 + OKGIIK_11315 0.82 -0.7
2,428,898 - +0.5
2,428,900 + -0.6
2,428,901 - -1.5
2,428,901 - +0.2
2,428,901 - -0.6
2,428,901 - -1.2
2,428,901 - +1.5
2,428,901 - -0.6
2,428,901 - -1.7
2,428,901 - -0.1
2,428,901 - +0.3
2,428,901 - +0.4
2,428,901 - +0.4
2,428,971 - +0.7
2,429,155 + -1.3
2,429,156 - -0.2
2,429,156 - -1.2
2,429,275 + salY OKGIIK_11320 0.18 +0.6
2,429,275 + salY OKGIIK_11320 0.18 -1.0
2,429,275 + salY OKGIIK_11320 0.18 +1.7
2,429,275 + salY OKGIIK_11320 0.18 +0.3
2,429,275 + salY OKGIIK_11320 0.18 +0.4
2,429,276 - salY OKGIIK_11320 0.19 +0.4
2,429,276 - salY OKGIIK_11320 0.19 -0.5
2,429,444 - salY OKGIIK_11320 0.32 +0.9
2,429,444 - salY OKGIIK_11320 0.32 -1.2
2,429,444 - salY OKGIIK_11320 0.32 +1.0
2,429,444 - salY OKGIIK_11320 0.32 +0.4
2,429,444 - salY OKGIIK_11320 0.32 +1.0
2,429,444 - salY OKGIIK_11320 0.32 -0.0
2,429,467 + salY OKGIIK_11320 0.34 -0.0
2,429,467 + salY OKGIIK_11320 0.34 -1.4
2,429,467 + salY OKGIIK_11320 0.34 +0.6
2,429,467 + salY OKGIIK_11320 0.34 -0.0
2,429,467 + salY OKGIIK_11320 0.34 -1.1
2,429,467 + salY OKGIIK_11320 0.34 -0.2
2,429,468 - salY OKGIIK_11320 0.34 -1.6
2,429,518 + salY OKGIIK_11320 0.38 -1.5
2,429,518 + salY OKGIIK_11320 0.38 -0.8
2,429,518 + salY OKGIIK_11320 0.38 +0.5
2,429,519 - salY OKGIIK_11320 0.38 -0.6
2,429,519 - salY OKGIIK_11320 0.38 +1.0
2,429,581 + salY OKGIIK_11320 0.43 +2.0
2,429,581 + salY OKGIIK_11320 0.43 +2.0
2,429,581 + salY OKGIIK_11320 0.43 -0.5
2,429,581 + salY OKGIIK_11320 0.43 -1.6
2,429,581 + salY OKGIIK_11320 0.43 -1.2
2,429,581 + salY OKGIIK_11320 0.43 -0.8
2,429,581 + salY OKGIIK_11320 0.43 +0.4
2,429,582 - salY OKGIIK_11320 0.43 -0.2
2,429,582 - salY OKGIIK_11320 0.43 +1.0
2,429,582 - salY OKGIIK_11320 0.43 +1.3
2,429,582 - salY OKGIIK_11320 0.43 -0.2
2,429,582 - salY OKGIIK_11320 0.43 -0.7
2,429,582 - salY OKGIIK_11320 0.43 -0.5
2,429,584 + salY OKGIIK_11320 0.43 -0.2
2,429,584 + salY OKGIIK_11320 0.43 -0.9
2,429,584 + salY OKGIIK_11320 0.43 -0.0
2,429,584 + salY OKGIIK_11320 0.43 -0.4
2,429,584 + salY OKGIIK_11320 0.43 -0.5
2,429,584 + salY OKGIIK_11320 0.43 -1.6
2,429,584 + salY OKGIIK_11320 0.43 +0.4
2,429,584 + salY OKGIIK_11320 0.43 +0.1
2,429,584 + salY OKGIIK_11320 0.43 +0.8
2,429,585 - salY OKGIIK_11320 0.43 +0.7
2,429,585 - salY OKGIIK_11320 0.43 +1.6
2,429,585 - salY OKGIIK_11320 0.43 -1.2
2,429,585 - salY OKGIIK_11320 0.43 +0.1
2,429,585 - salY OKGIIK_11320 0.43 -1.5
2,429,585 - salY OKGIIK_11320 0.43 +1.2
2,429,585 - salY OKGIIK_11320 0.43 -2.7
2,429,638 + salY OKGIIK_11320 0.48 +1.2
2,429,638 + salY OKGIIK_11320 0.48 +0.7
2,429,638 + salY OKGIIK_11320 0.48 -1.5
2,429,638 + salY OKGIIK_11320 0.48 -1.8
2,429,638 + salY OKGIIK_11320 0.48 +0.5
2,429,722 + salY OKGIIK_11320 0.54 -0.4
2,429,722 + salY OKGIIK_11320 0.54 -1.0
2,429,723 - salY OKGIIK_11320 0.55 +0.8
2,429,905 + salY OKGIIK_11320 0.69 -0.0
2,429,906 - salY OKGIIK_11320 0.69 -0.7

Or see this region's nucleotide sequence