Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05375

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_05370 and OKGIIK_05375 are separated by 18 nucleotidesOKGIIK_05375 and modA are separated by 81 nucleotidesmodA and OKGIIK_05385 overlap by 4 nucleotides OKGIIK_05370: OKGIIK_05370 - TonB-dep-Rec domain-containing protein, at 1,172,309 to 1,174,600 _05370 OKGIIK_05375: OKGIIK_05375 - DUF2478 domain-containing protein, at 1,174,619 to 1,175,149 _05375 OKGIIK_05380: modA - substrate-binding domain-containing protein, at 1,175,231 to 1,176,064 modA OKGIIK_05385: OKGIIK_05385 - TonB-dependent receptor, at 1,176,061 to 1,178,187 _05385 Position (kb) 1174 1175 1176Strain fitness (log2 ratio) -2 -1 0 1 2at 1173.684 kb on + strand, within OKGIIK_05370at 1173.684 kb on + strand, within OKGIIK_05370at 1173.685 kb on - strand, within OKGIIK_05370at 1173.685 kb on - strand, within OKGIIK_05370at 1173.685 kb on - strand, within OKGIIK_05370at 1173.685 kb on - strand, within OKGIIK_05370at 1173.697 kb on + strand, within OKGIIK_05370at 1173.720 kb on + strand, within OKGIIK_05370at 1173.721 kb on - strand, within OKGIIK_05370at 1173.721 kb on - strand, within OKGIIK_05370at 1173.721 kb on - strand, within OKGIIK_05370at 1173.726 kb on + strand, within OKGIIK_05370at 1173.727 kb on - strand, within OKGIIK_05370at 1173.727 kb on - strand, within OKGIIK_05370at 1173.727 kb on - strand, within OKGIIK_05370at 1173.730 kb on + strand, within OKGIIK_05370at 1173.730 kb on + strand, within OKGIIK_05370at 1173.731 kb on - strand, within OKGIIK_05370at 1173.904 kb on + strand, within OKGIIK_05370at 1173.904 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.918 kb on + strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1173.919 kb on - strand, within OKGIIK_05370at 1174.025 kb on + strand, within OKGIIK_05370at 1174.025 kb on + strand, within OKGIIK_05370at 1174.026 kb on - strand, within OKGIIK_05370at 1174.086 kb on - strand, within OKGIIK_05370at 1174.086 kb on - strand, within OKGIIK_05370at 1174.122 kb on + strand, within OKGIIK_05370at 1174.122 kb on + strand, within OKGIIK_05370at 1174.122 kb on + strand, within OKGIIK_05370at 1174.123 kb on - strand, within OKGIIK_05370at 1174.123 kb on - strand, within OKGIIK_05370at 1174.131 kb on + strand, within OKGIIK_05370at 1174.131 kb on + strand, within OKGIIK_05370at 1174.131 kb on + strand, within OKGIIK_05370at 1174.131 kb on + strand, within OKGIIK_05370at 1174.132 kb on - strand, within OKGIIK_05370at 1174.263 kb on + strand, within OKGIIK_05370at 1174.351 kb on + strand, within OKGIIK_05370at 1174.351 kb on + strand, within OKGIIK_05370at 1174.352 kb on - strand, within OKGIIK_05370at 1174.453 kb on + strandat 1174.454 kb on - strandat 1174.630 kb on + strandat 1174.630 kb on + strandat 1174.630 kb on + strandat 1174.631 kb on - strandat 1174.631 kb on - strandat 1174.760 kb on + strand, within OKGIIK_05375at 1175.016 kb on + strand, within OKGIIK_05375at 1175.016 kb on + strand, within OKGIIK_05375at 1175.016 kb on + strand, within OKGIIK_05375at 1175.016 kb on + strand, within OKGIIK_05375at 1175.016 kb on + strand, within OKGIIK_05375at 1175.016 kb on + strand, within OKGIIK_05375at 1175.024 kb on + strand, within OKGIIK_05375at 1175.024 kb on + strand, within OKGIIK_05375at 1175.024 kb on + strand, within OKGIIK_05375at 1175.024 kb on + strand, within OKGIIK_05375at 1175.024 kb on + strand, within OKGIIK_05375at 1175.024 kb on + strand, within OKGIIK_05375at 1175.025 kb on - strand, within OKGIIK_05375at 1175.109 kb on + strandat 1175.110 kb on - strandat 1175.110 kb on - strandat 1175.307 kb on + strandat 1175.308 kb on - strandat 1175.308 kb on - strandat 1175.308 kb on - strandat 1175.377 kb on - strand, within modAat 1175.377 kb on - strand, within modAat 1175.458 kb on - strand, within modAat 1175.631 kb on + strand, within modAat 1175.631 kb on + strand, within modAat 1175.631 kb on + strand, within modAat 1175.632 kb on - strand, within modAat 1175.632 kb on - strand, within modAat 1175.737 kb on + strand, within modAat 1175.738 kb on - strand, within modAat 1175.738 kb on - strand, within modAat 1175.765 kb on + strand, within modAat 1175.765 kb on + strand, within modAat 1175.765 kb on + strand, within modAat 1175.766 kb on - strand, within modAat 1175.766 kb on - strand, within modAat 1175.832 kb on + strand, within modAat 1175.832 kb on + strand, within modAat 1175.833 kb on - strand, within modAat 1175.833 kb on - strand, within modAat 1175.833 kb on - strand, within modAat 1175.833 kb on - strand, within modAat 1175.833 kb on - strand, within modAat 1175.925 kb on + strand, within modAat 1175.926 kb on - strand, within modAat 1175.926 kb on - strand, within modAat 1175.974 kb on - strand, within modAat 1175.974 kb on - strand, within modAat 1176.064 kb on + strandat 1176.064 kb on + strandat 1176.064 kb on + strandat 1176.065 kb on - strandat 1176.065 kb on - strandat 1176.091 kb on + strandat 1176.091 kb on + strandat 1176.091 kb on + strandat 1176.091 kb on + strandat 1176.091 kb on + strandat 1176.091 kb on + strandat 1176.091 kb on + strandat 1176.092 kb on - strandat 1176.140 kb on + strandat 1176.141 kb on - strandat 1176.141 kb on - strandat 1176.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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1,173,684 + OKGIIK_05370 0.60 -1.5
1,173,684 + OKGIIK_05370 0.60 -0.6
1,173,685 - OKGIIK_05370 0.60 +0.1
1,173,685 - OKGIIK_05370 0.60 -0.6
1,173,685 - OKGIIK_05370 0.60 +0.2
1,173,685 - OKGIIK_05370 0.60 +0.1
1,173,697 + OKGIIK_05370 0.61 -0.5
1,173,720 + OKGIIK_05370 0.62 +0.4
1,173,721 - OKGIIK_05370 0.62 +0.2
1,173,721 - OKGIIK_05370 0.62 -0.0
1,173,721 - OKGIIK_05370 0.62 -0.0
1,173,726 + OKGIIK_05370 0.62 -0.3
1,173,727 - OKGIIK_05370 0.62 -0.8
1,173,727 - OKGIIK_05370 0.62 +1.2
1,173,727 - OKGIIK_05370 0.62 -0.3
1,173,730 + OKGIIK_05370 0.62 -0.6
1,173,730 + OKGIIK_05370 0.62 +1.7
1,173,731 - OKGIIK_05370 0.62 -1.1
1,173,904 + OKGIIK_05370 0.70 -1.2
1,173,904 + OKGIIK_05370 0.70 -0.2
1,173,918 + OKGIIK_05370 0.70 -1.2
1,173,918 + OKGIIK_05370 0.70 -0.2
1,173,918 + OKGIIK_05370 0.70 -1.0
1,173,918 + OKGIIK_05370 0.70 -0.6
1,173,918 + OKGIIK_05370 0.70 +0.6
1,173,918 + OKGIIK_05370 0.70 -0.0
1,173,918 + OKGIIK_05370 0.70 -1.5
1,173,918 + OKGIIK_05370 0.70 +0.5
1,173,918 + OKGIIK_05370 0.70 -1.7
1,173,918 + OKGIIK_05370 0.70 -1.0
1,173,918 + OKGIIK_05370 0.70 -0.5
1,173,918 + OKGIIK_05370 0.70 -0.6
1,173,919 - OKGIIK_05370 0.70 -1.0
1,173,919 - OKGIIK_05370 0.70 -0.5
1,173,919 - OKGIIK_05370 0.70 +0.7
1,173,919 - OKGIIK_05370 0.70 -0.0
1,173,919 - OKGIIK_05370 0.70 -0.5
1,173,919 - OKGIIK_05370 0.70 -2.3
1,173,919 - OKGIIK_05370 0.70 -0.3
1,173,919 - OKGIIK_05370 0.70 -0.2
1,173,919 - OKGIIK_05370 0.70 +1.2
1,174,025 + OKGIIK_05370 0.75 +0.6
1,174,025 + OKGIIK_05370 0.75 -0.2
1,174,026 - OKGIIK_05370 0.75 -0.5
1,174,086 - OKGIIK_05370 0.78 -1.1
1,174,086 - OKGIIK_05370 0.78 +0.1
1,174,122 + OKGIIK_05370 0.79 +0.2
1,174,122 + OKGIIK_05370 0.79 -1.2
1,174,122 + OKGIIK_05370 0.79 -2.2
1,174,123 - OKGIIK_05370 0.79 +0.4
1,174,123 - OKGIIK_05370 0.79 -0.3
1,174,131 + OKGIIK_05370 0.79 -0.6
1,174,131 + OKGIIK_05370 0.79 -0.9
1,174,131 + OKGIIK_05370 0.79 -1.0
1,174,131 + OKGIIK_05370 0.79 -1.7
1,174,132 - OKGIIK_05370 0.80 +0.4
1,174,263 + OKGIIK_05370 0.85 -1.8
1,174,351 + OKGIIK_05370 0.89 -1.2
1,174,351 + OKGIIK_05370 0.89 -1.3
1,174,352 - OKGIIK_05370 0.89 -1.7
1,174,453 + -0.5
1,174,454 - +0.8
1,174,630 + +0.7
1,174,630 + -1.9
1,174,630 + -0.0
1,174,631 - +0.0
1,174,631 - +1.8
1,174,760 + OKGIIK_05375 0.27 -0.6
1,175,016 + OKGIIK_05375 0.75 -1.7
1,175,016 + OKGIIK_05375 0.75 -0.5
1,175,016 + OKGIIK_05375 0.75 -1.9
1,175,016 + OKGIIK_05375 0.75 -0.1
1,175,016 + OKGIIK_05375 0.75 -0.8
1,175,016 + OKGIIK_05375 0.75 +0.4
1,175,024 + OKGIIK_05375 0.76 -0.1
1,175,024 + OKGIIK_05375 0.76 -0.3
1,175,024 + OKGIIK_05375 0.76 -0.2
1,175,024 + OKGIIK_05375 0.76 +0.4
1,175,024 + OKGIIK_05375 0.76 -0.7
1,175,024 + OKGIIK_05375 0.76 -0.2
1,175,025 - OKGIIK_05375 0.76 +1.6
1,175,109 + +0.4
1,175,110 - +1.1
1,175,110 - -2.2
1,175,307 + -1.0
1,175,308 - +0.1
1,175,308 - -0.8
1,175,308 - +1.2
1,175,377 - modA OKGIIK_05380 0.18 +1.2
1,175,377 - modA OKGIIK_05380 0.18 -1.0
1,175,458 - modA OKGIIK_05380 0.27 -1.0
1,175,631 + modA OKGIIK_05380 0.48 +0.2
1,175,631 + modA OKGIIK_05380 0.48 -0.3
1,175,631 + modA OKGIIK_05380 0.48 -1.4
1,175,632 - modA OKGIIK_05380 0.48 -0.9
1,175,632 - modA OKGIIK_05380 0.48 -1.3
1,175,737 + modA OKGIIK_05380 0.61 -1.3
1,175,738 - modA OKGIIK_05380 0.61 -0.3
1,175,738 - modA OKGIIK_05380 0.61 -0.6
1,175,765 + modA OKGIIK_05380 0.64 -0.3
1,175,765 + modA OKGIIK_05380 0.64 -0.6
1,175,765 + modA OKGIIK_05380 0.64 -0.5
1,175,766 - modA OKGIIK_05380 0.64 -0.3
1,175,766 - modA OKGIIK_05380 0.64 +0.1
1,175,832 + modA OKGIIK_05380 0.72 +1.7
1,175,832 + modA OKGIIK_05380 0.72 +1.8
1,175,833 - modA OKGIIK_05380 0.72 -0.9
1,175,833 - modA OKGIIK_05380 0.72 -2.2
1,175,833 - modA OKGIIK_05380 0.72 -0.6
1,175,833 - modA OKGIIK_05380 0.72 +0.2
1,175,833 - modA OKGIIK_05380 0.72 -0.6
1,175,925 + modA OKGIIK_05380 0.83 +0.1
1,175,926 - modA OKGIIK_05380 0.83 +0.2
1,175,926 - modA OKGIIK_05380 0.83 +0.2
1,175,974 - modA OKGIIK_05380 0.89 +1.4
1,175,974 - modA OKGIIK_05380 0.89 +1.1
1,176,064 + -0.3
1,176,064 + -2.0
1,176,064 + -0.3
1,176,065 - -0.1
1,176,065 - +1.4
1,176,091 + +0.6
1,176,091 + +1.1
1,176,091 + -0.6
1,176,091 + +0.8
1,176,091 + +0.2
1,176,091 + +1.6
1,176,091 + -0.8
1,176,092 - -0.7
1,176,140 + -1.8
1,176,141 - -0.9
1,176,141 - -0.6
1,176,141 - -0.4

Or see this region's nucleotide sequence