Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrA and OKGIIK_03985 are separated by 149 nucleotides OKGIIK_03985 and rplU are separated by 110 nucleotides rplU and rpmA are separated by 19 nucleotides rpmA and obgE are separated by 178 nucleotides
OKGIIK_03980: uvrA - excinuclease ABC subunit UvrA, at 870,725 to 873,688
uvrA
OKGIIK_03985: OKGIIK_03985 - DUF2059 domain-containing protein, at 873,838 to 874,470
_03985
OKGIIK_03990: rplU - 50S ribosomal protein L21, at 874,581 to 874,895
rplU
OKGIIK_03995: rpmA - 50S ribosomal protein L27, at 874,915 to 875,172
rpmA
OKGIIK_04000: obgE - GTPase ObgE, at 875,351 to 876,430
obgE
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 872.889 kb on + strand, within uvrA at 872.889 kb on + strand, within uvrA at 872.890 kb on - strand, within uvrA at 872.890 kb on - strand, within uvrA at 872.890 kb on - strand, within uvrA at 872.910 kb on + strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 873.246 kb on + strand, within uvrA at 873.246 kb on + strand, within uvrA at 873.246 kb on + strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.355 kb on - strand, within uvrA at 873.355 kb on - strand, within uvrA at 873.355 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.510 kb on + strand at 873.511 kb on - strand at 873.531 kb on + strand at 873.531 kb on + strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.699 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.741 kb on + strand at 873.741 kb on + strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.843 kb on + strand at 873.844 kb on - strand at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.510 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.287 kb on + strand at 875.287 kb on + strand at 875.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 872,889 + uvrA OKGIIK_03980 0.73 +0.6 872,889 + uvrA OKGIIK_03980 0.73 -1.4 872,890 - uvrA OKGIIK_03980 0.73 -0.2 872,890 - uvrA OKGIIK_03980 0.73 -0.7 872,890 - uvrA OKGIIK_03980 0.73 +0.4 872,910 + uvrA OKGIIK_03980 0.74 -0.5 872,911 - uvrA OKGIIK_03980 0.74 -2.2 872,911 - uvrA OKGIIK_03980 0.74 -0.6 872,911 - uvrA OKGIIK_03980 0.74 -1.9 872,911 - uvrA OKGIIK_03980 0.74 -1.0 872,911 - uvrA OKGIIK_03980 0.74 -1.4 873,246 + uvrA OKGIIK_03980 0.85 -0.0 873,246 + uvrA OKGIIK_03980 0.85 -0.7 873,246 + uvrA OKGIIK_03980 0.85 -0.7 873,247 - uvrA OKGIIK_03980 0.85 +0.6 873,247 - uvrA OKGIIK_03980 0.85 +0.6 873,247 - uvrA OKGIIK_03980 0.85 +1.2 873,247 - uvrA OKGIIK_03980 0.85 -0.0 873,354 + uvrA OKGIIK_03980 0.89 -0.7 873,354 + uvrA OKGIIK_03980 0.89 +0.4 873,354 + uvrA OKGIIK_03980 0.89 -1.9 873,354 + uvrA OKGIIK_03980 0.89 -2.7 873,354 + uvrA OKGIIK_03980 0.89 -1.0 873,354 + uvrA OKGIIK_03980 0.89 -2.9 873,355 - uvrA OKGIIK_03980 0.89 -0.9 873,355 - uvrA OKGIIK_03980 0.89 -2.3 873,355 - uvrA OKGIIK_03980 0.89 -2.1 873,370 - uvrA OKGIIK_03980 0.89 -0.7 873,370 - uvrA OKGIIK_03980 0.89 -0.2 873,370 - uvrA OKGIIK_03980 0.89 -0.0 873,370 - uvrA OKGIIK_03980 0.89 -1.8 873,370 - uvrA OKGIIK_03980 0.89 -0.9 873,370 - uvrA OKGIIK_03980 0.89 -1.5 873,375 + uvrA OKGIIK_03980 0.89 -0.7 873,375 + uvrA OKGIIK_03980 0.89 -0.3 873,375 + uvrA OKGIIK_03980 0.89 +1.4 873,375 + uvrA OKGIIK_03980 0.89 -0.9 873,375 + uvrA OKGIIK_03980 0.89 +0.8 873,375 + uvrA OKGIIK_03980 0.89 -1.2 873,375 + uvrA OKGIIK_03980 0.89 +1.6 873,375 + uvrA OKGIIK_03980 0.89 -0.7 873,375 + uvrA OKGIIK_03980 0.89 +0.4 873,375 + uvrA OKGIIK_03980 0.89 -1.0 873,375 + uvrA OKGIIK_03980 0.89 +0.2 873,376 - uvrA OKGIIK_03980 0.89 -0.5 873,376 - uvrA OKGIIK_03980 0.89 -0.9 873,376 - uvrA OKGIIK_03980 0.89 -0.7 873,376 - uvrA OKGIIK_03980 0.89 -2.5 873,376 - uvrA OKGIIK_03980 0.89 +0.8 873,376 - uvrA OKGIIK_03980 0.89 +0.4 873,376 - uvrA OKGIIK_03980 0.89 -1.7 873,376 - uvrA OKGIIK_03980 0.89 +0.2 873,376 - uvrA OKGIIK_03980 0.89 -0.7 873,376 - uvrA OKGIIK_03980 0.89 -1.7 873,376 - uvrA OKGIIK_03980 0.89 -1.6 873,376 - uvrA OKGIIK_03980 0.89 -0.5 873,376 - uvrA OKGIIK_03980 0.89 -1.9 873,376 - uvrA OKGIIK_03980 0.89 -2.4 873,376 - uvrA OKGIIK_03980 0.89 -0.0 873,376 - uvrA OKGIIK_03980 0.89 +0.2 873,376 - uvrA OKGIIK_03980 0.89 +1.2 873,510 + -0.4 873,511 - +2.6 873,531 + -1.1 873,531 + +2.6 873,532 - -1.2 873,532 - -1.2 873,532 - -1.6 873,532 - -2.1 873,552 + -1.2 873,552 + -0.0 873,552 + +0.6 873,552 + -1.3 873,552 + -0.8 873,553 - -1.6 873,553 - -0.3 873,553 - -0.0 873,553 - -0.4 873,553 - -0.4 873,553 - -1.6 873,553 - -0.2 873,553 - +0.6 873,553 - -0.4 873,699 + -0.4 873,718 + -1.2 873,718 + -0.6 873,718 + -0.4 873,718 + -2.2 873,718 + -1.0 873,718 + -2.3 873,718 + -2.1 873,718 + -0.1 873,718 + +0.6 873,719 - -1.6 873,719 - +0.6 873,719 - +1.6 873,719 - +0.6 873,719 - -0.0 873,719 - -1.6 873,719 - -1.0 873,720 + +0.9 873,720 + -0.2 873,720 + +0.6 873,720 + +0.4 873,720 + +0.8 873,720 + -1.9 873,720 + -0.1 873,720 + -1.3 873,720 + -0.0 873,720 + +0.4 873,720 + -1.0 873,720 + -0.0 873,720 + +1.9 873,720 + -0.2 873,720 + -0.4 873,720 + -0.0 873,720 + +0.3 873,721 - -0.1 873,721 - +0.3 873,721 - -2.4 873,721 - -0.8 873,721 - +0.6 873,721 - -2.4 873,721 - -0.0 873,721 - -0.0 873,721 - +0.6 873,721 - -1.7 873,721 - -2.7 873,721 - -0.4 873,721 - -0.2 873,721 - -0.5 873,721 - -0.4 873,741 + -0.4 873,741 + +0.6 873,742 - -0.6 873,742 - +1.6 873,742 - -0.7 873,742 - -0.3 873,742 - -0.6 873,781 + +0.3 873,781 + +1.3 873,781 + +0.3 873,781 + -0.1 873,781 + +0.8 873,781 + -0.7 873,781 + +0.8 873,781 + -1.9 873,781 + +1.0 873,781 + +0.3 873,781 + +1.6 873,781 + -0.7 873,781 + +0.3 873,781 + +1.0 873,781 + -0.1 873,781 + -1.0 873,781 + +0.7 873,781 + -1.1 873,781 + +0.8 873,781 + -1.7 873,781 + +0.6 873,781 + -0.7 873,781 + +0.1 873,781 + -0.7 873,781 + -0.6 873,781 + -0.7 873,781 + -1.2 873,781 + -0.2 873,781 + +3.2 873,781 + -0.2 873,781 + -0.2 873,781 + -0.4 873,781 + -1.7 873,781 + -0.4 873,782 - -0.4 873,782 - +0.4 873,782 - +0.3 873,782 - +1.6 873,782 - -2.1 873,782 - -0.2 873,782 - +1.3 873,782 - -0.5 873,782 - +0.6 873,782 - -0.4 873,782 - -0.7 873,782 - -0.0 873,782 - -0.0 873,782 - -0.4 873,782 - -0.7 873,782 - +1.2 873,782 - -2.0 873,782 - +0.4 873,782 - -1.0 873,782 - -0.2 873,782 - -2.2 873,782 - -0.4 873,782 - -2.2 873,782 - +0.6 873,782 - -0.0 873,782 - -1.4 873,788 + +2.0 873,788 + +1.6 873,788 + -2.3 873,788 + +0.7 873,788 + -2.0 873,788 + +0.8 873,788 + -0.7 873,788 + +1.6 873,788 + -0.4 873,788 + +1.6 873,788 + -0.4 873,788 + +0.2 873,788 + -0.4 873,789 - +0.8 873,789 - +0.6 873,789 - -0.7 873,789 - -0.6 873,789 - +0.6 873,789 - -0.0 873,789 - -0.7 873,789 - -0.7 873,789 - +0.1 873,843 + -0.3 873,844 - +0.6 873,929 + OKGIIK_03985 0.14 -1.2 873,929 + OKGIIK_03985 0.14 -1.1 873,929 + OKGIIK_03985 0.14 +0.6 873,929 + OKGIIK_03985 0.14 -1.2 873,929 + OKGIIK_03985 0.14 -1.2 873,929 + OKGIIK_03985 0.14 -0.7 873,929 + OKGIIK_03985 0.14 -1.6 873,929 + OKGIIK_03985 0.14 -0.0 873,929 + OKGIIK_03985 0.14 +0.4 873,929 + OKGIIK_03985 0.14 +0.3 873,930 - OKGIIK_03985 0.15 -0.4 873,930 - OKGIIK_03985 0.15 -0.0 873,930 - OKGIIK_03985 0.15 -1.2 873,930 - OKGIIK_03985 0.15 +0.6 873,930 - OKGIIK_03985 0.15 -1.0 874,033 + OKGIIK_03985 0.31 +1.6 874,033 + OKGIIK_03985 0.31 +1.6 874,033 + OKGIIK_03985 0.31 -0.0 874,034 - OKGIIK_03985 0.31 -0.6 874,034 - OKGIIK_03985 0.31 -2.1 874,034 - OKGIIK_03985 0.31 +0.4 874,144 + OKGIIK_03985 0.48 -0.7 874,144 + OKGIIK_03985 0.48 -1.6 874,144 + OKGIIK_03985 0.48 -1.2 874,144 + OKGIIK_03985 0.48 +1.3 874,144 + OKGIIK_03985 0.48 -0.7 874,144 + OKGIIK_03985 0.48 -0.7 874,145 - OKGIIK_03985 0.48 -0.7 874,145 - OKGIIK_03985 0.48 -2.0 874,145 - OKGIIK_03985 0.48 -1.9 874,145 - OKGIIK_03985 0.48 -0.7 874,145 - OKGIIK_03985 0.48 -0.9 874,145 - OKGIIK_03985 0.48 -2.5 874,510 + +0.8 875,260 + +0.6 875,260 + +0.6 875,260 + -0.6 875,260 + -0.4 875,260 + -0.9 875,260 + +0.6 875,260 + -0.8 875,260 + -0.7 875,260 + -0.1 875,260 + -2.1 875,261 - +0.2 875,261 - -0.4 875,261 - +0.6 875,261 - +0.4 875,261 - -0.8 875,287 + -2.0 875,287 + -1.1 875,288 - -2.2
Or see this region's nucleotide sequence